Mercurial > repos > mvdbeek > bam_readtagger

annotate deploy.sh @ 39:7cad80dc3b58 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 93565e8561333745a7f16729c05039aa23f58077-dirty
author mvdbeek
date Thu, 14 Dec 2017 09:15:24 -0500
parents e68a225983d5
children
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92415330ad3e planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit d63500891dc173a7657bb9a9aabbeb6cf2ddb9e3-dirty
mvdbeek
parents:
diff changeset
1 #!/bin/bash
92415330ad3e planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit d63500891dc173a7657bb9a9aabbeb6cf2ddb9e3-dirty
mvdbeek
parents:
diff changeset
2 # this script uploads galaxy tools in the current directory to the galaxy toolsheds
92415330ad3e planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit d63500891dc173a7657bb9a9aabbeb6cf2ddb9e3-dirty
mvdbeek
parents:
diff changeset
3 set -e
92415330ad3e planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit d63500891dc173a7657bb9a9aabbeb6cf2ddb9e3-dirty
mvdbeek
parents:
diff changeset
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92415330ad3e planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit d63500891dc173a7657bb9a9aabbeb6cf2ddb9e3-dirty
mvdbeek
parents:
diff changeset
5 CURRENT_DIR=$(dirname $0)
92415330ad3e planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit d63500891dc173a7657bb9a9aabbeb6cf2ddb9e3-dirty
mvdbeek
parents:
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6
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e68a225983d5 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit b0627386ac1cc004dc71fc788bf37111213b1fab
mvdbeek
parents: 2
diff changeset
7 echo "Installing planemo" # Would be great if the dependencies would persist in deployment mode
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865589023a17 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit ca94ae0d3a25a511f7d2c98712efc37b332642e7
mvdbeek
parents: 1
diff changeset
8 pip install planemo
865589023a17 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit ca94ae0d3a25a511f7d2c98712efc37b332642e7
mvdbeek
parents: 1
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9
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92415330ad3e planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit d63500891dc173a7657bb9a9aabbeb6cf2ddb9e3-dirty
mvdbeek
parents:
diff changeset
10 echo "Deploying to Testtoolshed ..."
92415330ad3e planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit d63500891dc173a7657bb9a9aabbeb6cf2ddb9e3-dirty
mvdbeek
parents:
diff changeset
11 planemo shed_update -r --force_repository_creation -t testtoolshed --shed_key_from_env TTS_KEY "$CURRENT_DIR"
92415330ad3e planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit d63500891dc173a7657bb9a9aabbeb6cf2ddb9e3-dirty
mvdbeek
parents:
diff changeset
12
92415330ad3e planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit d63500891dc173a7657bb9a9aabbeb6cf2ddb9e3-dirty
mvdbeek
parents:
diff changeset
13 echo "Deploying to Toolshed ..."
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815e4eea0e1d planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit d63500891dc173a7657bb9a9aabbeb6cf2ddb9e3-dirty
mvdbeek
parents: 0
diff changeset
14 planemo shed_update -r --force_repository_creation -t toolshed --shed_key_from_env TS_KEY $CURRENT_DIR
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92415330ad3e planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit d63500891dc173a7657bb9a9aabbeb6cf2ddb9e3-dirty
mvdbeek
parents:
diff changeset
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92415330ad3e planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit d63500891dc173a7657bb9a9aabbeb6cf2ddb9e3-dirty
mvdbeek
parents:
diff changeset
16 echo "Successfully deployed to toolsheds"
92415330ad3e planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit d63500891dc173a7657bb9a9aabbeb6cf2ddb9e3-dirty
mvdbeek
parents:
diff changeset
17 exit 0