Mercurial > repos > mvdbeek > add_input_name_as_column

comparison add_input_name_as_column.py @ 3:c9459a7e08ff draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/add_input_name_as_column commit 1775d01920f27931a1935e233766f615d753502b
author iuc
date Tue, 14 Oct 2025 17:12:53 +0000
parents ea4ad41e01fc
children
comparison
equal deleted inserted replaced
2:ea4ad41e01fc 3:c9459a7e08ff
2 import io 2 import io
3 3
4 4
5 def Parser(): 5 def Parser():
6 the_parser = argparse.ArgumentParser(description="add label to last column of file") 6 the_parser = argparse.ArgumentParser(description="add label to last column of file")
7 the_parser.add_argument('--input', required=True, action="store", type=str, help="input tabular file") 7 the_parser.add_argument(
8 the_parser.add_argument('--output', required=True, action="store", type=str, help="output file path") 8 "--input", required=True, action="store", type=str, help="input tabular file"
9 the_parser.add_argument('--label', required=True, action="store", type=str, help="label to add in last column") 9 )
10 the_parser.add_argument('--header', action="store", type=str, help="column label for last column") 10 the_parser.add_argument(
11 the_parser.add_argument('--prepend', action='store_true', default=False, help='Prepend column instead of appending' ) 11 "--output", required=True, action="store", type=str, help="output file path"
12 )
13 the_parser.add_argument(
14 "--label",
15 required=True,
16 action="store",
17 type=str,
18 help="label to add in last column",
19 )
20 the_parser.add_argument(
21 "--header", action="store", type=str, help="column label for last column"
22 )
23 the_parser.add_argument(
24 "--prepend",
25 action="store_true",
26 default=False,
27 help="Prepend column instead of appending",
28 )
12 29
13 args = the_parser.parse_args() 30 args = the_parser.parse_args()
14 return args 31 return args
15 32
16 33
17 args = Parser() 34 args = Parser()
18 35
19 36
20 with io.open(args.input, encoding="utf-8") as input, io.open(args.output, 'w', encoding="utf-8") as output: 37 with io.open(args.input, encoding="utf-8") as input, io.open(
38 args.output, "w", encoding="utf-8"
39 ) as output:
21 for i, line in enumerate(input): 40 for i, line in enumerate(input):
22 line = line.strip('\n') 41 line = line.strip("\n")
23 if (i == 0) and args.header: 42 if (i == 0) and args.header:
24 new_entry = args.header 43 new_entry = args.header
25 else: 44 else:
26 new_entry = args.label 45 new_entry = args.label
27 if args.prepend: 46 if args.prepend: