Mercurial > repos > matthias > stacks2_ustacks

comparison test-data/gstacks/gstacks.log.distribs @ 6:742c94cfb8cf draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f507c4eaca0fe04e730d7c3bbb9e9d2488239a9f
author matthias
date Thu, 20 Jun 2019 08:10:32 -0400
parents ccbb048a4178
children
comparison
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5:ccbb048a4178 6:742c94cfb8cf
17 17
18 BEGIN clockings 18 BEGIN clockings
19 Num. threads: 1 19 Num. threads: 1
20 Parallel time: 0.0 20 Parallel time: 0.0
21 Average thread time spent: 21 Average thread time spent:
22 0.0 reading (2.9%) 22 0.0 reading (3.1%)
23 0.0 processing (95.7%) 23 0.0 processing (95.2%)
24 0.0 pre-alignments block (69.1%) 24 0.0 pre-alignments block (72.2%)
25 0.0 reformatting fw-reads (0.2%) 25 0.0 reformatting fw-reads (0.1%)
26 0.0 assembling (21.2%) 26 0.0 assembling (22.2%)
27 0.0 initializing alignments (4.4%) 27 0.0 initializing alignments (5.4%)
28 0.0 aligning (41.3%) 28 0.0 aligning (42.9%)
29 0.0 merging read pairs (2.0%) 29 0.0 merging read pairs (1.5%)
30 0.0 post-alignments block (25.2%) 30 0.0 post-alignments block (21.2%)
31 0.0 filtering reads (0.0%) 31 0.0 filtering reads (0.0%)
32 0.0 counting nucleotides (4.0%) 32 0.0 counting nucleotides (3.5%)
33 0.0 genotyping (1.9%) 33 0.0 genotyping (1.9%)
34 0.0 haplotyping (1.2%) 34 0.0 haplotyping (1.0%)
35 0.0 computing consensus (0.1%) 35 0.0 computing consensus (0.1%)
36 0.0 building_fa (0.1%) 36 0.0 building_fa (0.1%)
37 0.0 building_vcf (17.8%) 37 0.0 building_vcf (14.6%)
38 0.0 writing_fa (0.1%) 38 0.0 writing_fa (0.1%)
39 0.0 writing_vcf (1.0%) 39 0.0 writing_vcf (1.3%)
40 0.0 clocking (0.2%) 40 0.0 clocking (0.2%)
41 Total time spent writing vcf: 0.0 (1.0%) 41 Total time spent writing vcf: 0.0 (1.3%)
42 VCFwrite block size: mean=1.0(n=3); max=1 42 VCFwrite block size: mean=1.0(n=3); max=1
43 END clockings 43 END clockings