Mercurial > repos > matthias > stacks2_tsv2bam

diff stacks_tsv2bam.xml @ 3:56eb0bc12179 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c42d129928cfd153ba7a922368c8e76e79b242b2
author matthias
date Fri, 04 Jan 2019 03:33:00 -0500
parents 9cd90b2f08f7
children 60c1c4d7d2c1
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--- a/stacks_tsv2bam.xml	Tue Dec 18 12:56:18 2018 -0500
+++ b/stacks_tsv2bam.xml	Fri Jan 04 03:33:00 2019 -0500
@@ -84,9 +84,9 @@
 
     <inputs>
         <!-- TODO make the inputs macros and use in other tools -->
-        <param name="input_cat" format="tabular,txt" type="data_collection" collection_type="list" label="Catalog files" help="output from a previous Stacks pipeline steps e.g. denovo_map, refmap or cstacks" />
-        <param name="input_tags" format="tabular,txt" type="data_collection" collection_type="list" label="Samples stacks" help="output from previous Stacks pipeline steps e.g. denovo_map, refmap or ustacks/pstacks" />
-        <param name="input_matches" format="tabular,txt" type="data_collection" collection_type="list" label="Matches to the catalog" help="output from previous Stacks pipeline steps e.g. denovo_map, refmap or sstacks" />
+        <expand macro="input_cat_macro"/>
+        <expand macro="input_tags_macro"/>
+        <expand macro="input_matches_macro"/>
         <!-- TODO add BAM? -->
         <expand macro="fastq_input_macro" fastq_optional="true"/>
         <param name="popmap" type="data" format="tabular,txt" label="Population map" help="If set, matching will be done only for samples listed in this file" optional="true" argument="-M" />