Mercurial > repos > matthias > stacks2_tsv2bam

comparison test-data/sstacks/sstacks.log @ 4:60c1c4d7d2c1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
author matthias
date Wed, 27 Feb 2019 09:53:30 -0500
parents 99d0b19ef534
children
comparison
equal deleted inserted replaced
3:56eb0bc12179 4:60c1c4d7d2c1
21 0 loci matched no catalog locus; 21 0 loci matched no catalog locus;
22 0 loci matched more than one catalog locus and were excluded. 22 0 loci matched more than one catalog locus and were excluded.
23 0 loci contained SNPs unaccounted for in the catalog and were excluded. 23 0 loci contained SNPs unaccounted for in the catalog and were excluded.
24 0 loci had no verified haplotypes. 24 0 loci had no verified haplotypes.
25 0 loci had inconsistent alignments to a catalog locus and were excluded. 25 0 loci had inconsistent alignments to a catalog locus and were excluded.
26 Outputing to file stacks_outputs/PopA_01.matches.tsv 26 Outputing to file stacks_inputs/PopA_01.matches.tsv
27 27
28 Processing sample 'stacks_inputs/PopA_02' [2 of 2] 28 Processing sample 'stacks_inputs/PopA_02' [2 of 2]
29 Parsing stacks_inputs/PopA_02.tags.tsv 29 Parsing stacks_inputs/PopA_02.tags.tsv
30 Parsing stacks_inputs/PopA_02.snps.tsv 30 Parsing stacks_inputs/PopA_02.snps.tsv
31 Parsing stacks_inputs/PopA_02.alleles.tsv 31 Parsing stacks_inputs/PopA_02.alleles.tsv
41 0 loci matched no catalog locus; 41 0 loci matched no catalog locus;
42 0 loci matched more than one catalog locus and were excluded. 42 0 loci matched more than one catalog locus and were excluded.
43 0 loci contained SNPs unaccounted for in the catalog and were excluded. 43 0 loci contained SNPs unaccounted for in the catalog and were excluded.
44 0 loci had no verified haplotypes. 44 0 loci had no verified haplotypes.
45 0 loci had inconsistent alignments to a catalog locus and were excluded. 45 0 loci had inconsistent alignments to a catalog locus and were excluded.
46 Outputing to file stacks_outputs/PopA_02.matches.tsv 46 Outputing to file stacks_inputs/PopA_02.matches.tsv
47 47
48 sstacks is done. 48 sstacks is done.