Mercurial > repos > matthias > stacks2_tsv2bam

annotate test-data/populations/populations.log.distribs @ 2:c3a4fb832c18 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 9c41b2599125298b1a4d9ffb2511cdc87ff79a73
author matthias
date Tue, 18 Dec 2018 12:56:18 -0500
parents 99d0b19ef534
children 60c1c4d7d2c1
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99d0b19ef534 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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1 # Note: Individual distributions can be extracted using the `stacks-dist-extract` utility.
99d0b19ef534 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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2 # e.g. `stacks-dist-extract populations.log.distribs dist_name`
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4 BEGIN batch_progress
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5 Batch 1: analyzed 3 loci; filtered 0 loci; 3 loci seen.
99d0b19ef534 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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6 END batch_progress
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8 BEGIN samples_per_loc_prefilters
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9 # Distribution of valid samples matched to a catalog locus prior to filtering.
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10 n_samples n_loci
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12 END samples_per_loc_prefilters
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14 BEGIN missing_samples_per_loc_prefilters
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16 # Distribution of missing samples for each catalog locus prior to filtering.
99d0b19ef534 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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17 # Absent samples at locus Count
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19 END missing_samples_per_loc_prefilters
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21 BEGIN snps_per_loc_prefilters
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22 # Distribution of the number of SNPs per catalog locus prior to filtering.
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23 n_snps n_loci
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26 END snps_per_loc_prefilters
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28 BEGIN samples_per_loc_postfilters
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29 # Distribution of valid samples matched to a catalog locus after filtering.
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30 n_samples n_loci
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32 END samples_per_loc_postfilters
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34 BEGIN missing_samples_per_loc_postfilters
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36 # Distribution of missing samples for each catalog locus after filtering.
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37 # Absent samples at locus Count
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39 END missing_samples_per_loc_postfilters
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41 BEGIN snps_per_loc_postfilters
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42 # Distribution of the number of SNPs per catalog locus (after filtering).
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43 n_snps n_loci
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46 END snps_per_loc_postfilters