Mercurial > repos > matthias > stacks2_sstacks

diff stacks_sstacks.xml @ 3:e0ac675a6785 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 9c41b2599125298b1a4d9ffb2511cdc87ff79a73
author matthias
date Tue, 18 Dec 2018 13:00:04 -0500
parents 9a206f0fa740
children 176f2a0c6683
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line diff
--- a/stacks_sstacks.xml	Fri Nov 30 07:39:33 2018 -0500
+++ b/stacks_sstacks.xml	Tue Dec 18 13:00:04 2018 -0500
@@ -12,7 +12,7 @@
 
 &&
 
-## TODO should there be only a single catalog?
+## TODO make sure that there is only a single catalog?
 #set $catalog = ""
 #for $input_file in $input_cat
     #set $filename = str($input_file.element_identifier)
@@ -24,7 +24,6 @@
         ln -s '${input_file}' 'stacks_inputs/$filename' &&
 
         #if $filename.endswith('.tags.tsv')
-            ##set catalog += " -c 'stacks_inputs/"+$filename[:-17] + "'"
             #set catalog += " -c 'stacks_inputs/'"
         #end if
     #end if