Mercurial > repos > matthias > stacks2_shortreads

comparison test-data/tsv2bam/tsv2bam.log @ 5:56d3555cf5f7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f507c4eaca0fe04e730d7c3bbb9e9d2488239a9f
author matthias
date Thu, 20 Jun 2019 08:13:18 -0400
parents 061c9e133d1e
children
comparison
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4:c23695f62bdd 5:56d3555cf5f7
1 tsv2bam v2.2, executed 2018-11-27 13:20:44 1 tsv2bam v2.4, executed 2019-06-17 21:22:16 (zlib-1.2.11)
2 tsv2bam -P stacks_inputs -s PopA_01 -s PopA_02 -t 1 2 tsv2bam -P stacks_outputs -M denovo_map/popmap_cstacks.tsv -R demultiplexed/
3 Configuration for this run: 3 Configuration for this run:
4 Stacks directory: 'stacks_inputs/' 4 Stacks directory: 'stacks_outputs/'
5 Population map: 'denovo_map/popmap_cstacks.tsv'
5 Num. samples: 2 6 Num. samples: 2
7 Paired-end reads directory: 'demultiplexed/'
6 8
9 Paired-end reads files found, e.g. 'demultiplexed/PopA_01.2.fq'.
7 Loading the catalog... 10 Loading the catalog...
8 Processing sample 'PopA_01'... 11 Processing sample 'PopA_01'...
9 Processing sample 'PopA_02'... 12 Processing sample 'PopA_02'...
10 13
11 Sample 'PopA_01': matched 3 sample loci to 3 catalog loci; wrote 66 records. 14 Sample 'PopA_01': matched 3 sample loci to 3 catalog loci; found a paired-end read for 66 (100.0%) of the assembled forward reads; wrote 132 records.
12 Sample 'PopA_02': matched 3 sample loci to 3 catalog loci; wrote 60 records. 15 Sample 'PopA_02': matched 3 sample loci to 3 catalog loci; found a paired-end read for 60 (100.0%) of the assembled forward reads; wrote 120 records.
13 16
14 tsv2bam is done. 17 tsv2bam is done.