Mercurial > repos > matthias > stacks2_shortreads
comparison test-data/stacks_outputs/tsv2bam.log @ 5:56d3555cf5f7 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f507c4eaca0fe04e730d7c3bbb9e9d2488239a9f
| author | matthias |
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| date | Thu, 20 Jun 2019 08:13:18 -0400 |
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| 4:c23695f62bdd | 5:56d3555cf5f7 |
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| 1 tsv2bam v2.4, executed 2019-06-18 10:34:45 (zlib-1.2.11) | |
| 2 tsv2bam -P stacks_outputs -M denovo_map/popmap_cstacks.tsv -R demultiplexed/ | |
| 3 Configuration for this run: | |
| 4 Stacks directory: 'stacks_outputs/' | |
| 5 Population map: 'denovo_map/popmap_cstacks.tsv' | |
| 6 Num. samples: 2 | |
| 7 Paired-end reads directory: 'demultiplexed/' | |
| 8 | |
| 9 Paired-end reads files found, e.g. 'demultiplexed/PopA_01.2.fq'. | |
| 10 Loading the catalog... | |
| 11 Processing sample 'PopA_01'... | |
| 12 Processing sample 'PopA_02'... | |
| 13 | |
| 14 Sample 'PopA_01': matched 3 sample loci to 3 catalog loci; found a paired-end read for 66 (100.0%) of the assembled forward reads; wrote 132 records. | |
| 15 Sample 'PopA_02': matched 3 sample loci to 3 catalog loci; found a paired-end read for 60 (100.0%) of the assembled forward reads; wrote 120 records. | |
| 16 | |
| 17 tsv2bam is done. |