Mercurial > repos > matthias > stacks2_denovomap

comparison test-data/ustacks/ustacks.log @ 4:a70c766ce64f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
author matthias
date Wed, 27 Feb 2019 09:55:08 -0500
parents e5e5617c064a
children
comparison
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3:33ca88a71f08 4:a70c766ce64f
1 ustacks parameters selected: 1 ustacks parameters selected:
2 Input file: 'stacks_inputs/PopA_01.1.fq' 2 Input file: 'stacks_inputs/PopA_01.1.fastq'
3 Sample ID: 1 3 Sample ID: 1
4 Min depth of coverage to create a stack (m): 3 4 Min depth of coverage to create a stack (m): 3
5 Repeat removal algorithm: enabled 5 Repeat removal algorithm: enabled
6 Max distance allowed between stacks (M): 2 6 Max distance allowed between stacks (M): 2
7 Max distance allowed to align secondary reads: 4 7 Max distance allowed to align secondary reads: 4
43 Calling consensus sequences and haplotypes for catalog assembly... 43 Calling consensus sequences and haplotypes for catalog assembly...
44 Writing tags, SNPs, and alleles files... 44 Writing tags, SNPs, and alleles files...
45 Refetching read IDs...done. 45 Refetching read IDs...done.
46 ustacks is done. 46 ustacks is done.
47 ustacks parameters selected: 47 ustacks parameters selected:
48 Input file: 'stacks_inputs/PopA_02.1.fq' 48 Input file: 'stacks_inputs/PopA_02.1.fastq'
49 Sample ID: 2 49 Sample ID: 2
50 Min depth of coverage to create a stack (m): 3 50 Min depth of coverage to create a stack (m): 3
51 Repeat removal algorithm: enabled 51 Repeat removal algorithm: enabled
52 Max distance allowed between stacks (M): 2 52 Max distance allowed between stacks (M): 2
53 Max distance allowed to align secondary reads: 4 53 Max distance allowed to align secondary reads: 4