Mercurial > repos > matthias > stacks2_denovomap

annotate test-data/tmp/stacks_outputs/populations.haps.vcf @ 2:fa593b13402f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 9c41b2599125298b1a4d9ffb2511cdc87ff79a73
author matthias
date Tue, 18 Dec 2018 12:57:35 -0500
parents e5e5617c064a
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
parents:
diff changeset
1 ##fileformat=VCFv4.2
e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
parents:
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2 ##fileDate=20181128
e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
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3 ##source="Stacks v2.2"
e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
parents:
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4 ##INFO=<ID=AD,Number=R,Type=Integer,Description="Total Depth for Each Allele">
e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
parents:
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5 ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
parents:
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6 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
parents:
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7 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
parents:
diff changeset
8 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allele Depth">
e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
parents:
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9 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
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10 ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality">
e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
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11 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood">
e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
parents:
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12 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
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13 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
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14 ##INFO=<ID=loc_strand,Number=1,Type=Character,Description="Genomic strand the corresponding Stacks locus aligns on">
e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
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15 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PopA_01 PopA_02
e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
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16 1 1 . AC CA . PASS snp_columns=34,89 GT 0/1 0/1
e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
parents:
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17 2 1 . CG TT . PASS snp_columns=145,157 GT 0/1 0/1
e5e5617c064a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
matthias
parents:
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18 3 1 . GG AA . PASS snp_columns=163,182 GT 0/0 0/1