Mercurial > repos > matthias > stacks2_cstacks

comparison test-data/populations/populations.haps.vcf @ 4:924e7889aa05 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
author matthias
date Wed, 27 Feb 2019 09:51:06 -0500
parents e4b371f8a47a
children 687f84474d33
comparison
equal deleted inserted replaced
3:61afc5a3cd8e 4:924e7889aa05
1 ##fileformat=VCFv4.2 1 ##fileformat=VCFv4.2
2 ##fileDate=20181128 2 ##fileDate=20190225
3 ##source="Stacks v2.2" 3 ##source="Stacks v2.3b"
4 ##INFO=<ID=AD,Number=R,Type=Integer,Description="Total Depth for Each Allele"> 4 ##INFO=<ID=AD,Number=R,Type=Integer,Description="Total Depth for Each Allele">
5 ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency"> 5 ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
6 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> 6 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
7 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data"> 7 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
8 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allele Depth"> 8 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allele Depth">
12 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> 12 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
13 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> 13 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
14 ##INFO=<ID=loc_strand,Number=1,Type=Character,Description="Genomic strand the corresponding Stacks locus aligns on"> 14 ##INFO=<ID=loc_strand,Number=1,Type=Character,Description="Genomic strand the corresponding Stacks locus aligns on">
15 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PopA_01 PopA_02 15 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PopA_01 PopA_02
16 1 1 . AC CA . PASS snp_columns=34,89 GT 0/1 0/1 16 1 1 . AC CA . PASS snp_columns=34,89 GT 0/1 0/1
17 2 1 . CG TT . PASS snp_columns=145,157 GT 0/1 0/1
18 3 1 . GG AA . PASS snp_columns=163,182 GT 0/0 0/1