Mercurial > repos > matthias > samtools_view

comparison samtools_flagstat/test-data/samtools_flagstat_out1.txt @ 0:b6284c02c437 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
author matthias
date Fri, 22 Feb 2019 15:43:51 -0500
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-1:000000000000 0:b6284c02c437
1 200 + 0 in total (QC-passed reads + QC-failed reads)
2 0 + 0 secondary
3 0 + 0 supplementary
4 0 + 0 duplicates
5 25 + 0 mapped (12.50% : N/A)
6 200 + 0 paired in sequencing
7 100 + 0 read1
8 100 + 0 read2
9 0 + 0 properly paired (0.00% : N/A)
10 0 + 0 with itself and mate mapped
11 25 + 0 singletons (12.50% : N/A)
12 0 + 0 with mate mapped to a different chr
13 0 + 0 with mate mapped to a different chr (mapQ>=5)