Mercurial > repos > matthias > samtools_flagstat
annotate samtools_stats/test-data/6.stats.expected @ 2:d7a81b3c7303 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit f10a2b16814f61326750364c497ad143cac3d137-dirty
| author | matthias | 
|---|---|
| date | Mon, 25 Feb 2019 03:53:00 -0500 | 
| parents | 8f08fd44a749 | 
| children | 
| rev | line source | 
|---|---|
| 0 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 1 # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 2 # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow) | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 3 CHK 1a1c1362 32507d92 7bab45da | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 4 # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part. | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 5 SN raw total sequences: 2 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 6 SN filtered sequences: 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 7 SN sequences: 2 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 8 SN is sorted: 1 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 9 SN 1st fragments: 1 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 10 SN last fragments: 1 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 11 SN reads mapped: 2 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 12 SN reads mapped and paired: 2 # paired-end technology bit set + both mates mapped | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 13 SN reads unmapped: 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 14 SN reads properly paired: 2 # proper-pair bit set | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 15 SN reads paired: 2 # paired-end technology bit set | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 16 SN reads duplicated: 0 # PCR or optical duplicate bit set | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 17 SN reads MQ0: 0 # mapped and MQ=0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 18 SN reads QC failed: 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 19 SN non-primary alignments: 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 20 SN total length: 70 # ignores clipping | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 21 SN total first fragment length: 35 # ignores clipping | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 22 SN total last fragment length: 35 # ignores clipping | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 23 SN bases mapped: 70 # ignores clipping | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 24 SN bases mapped (cigar): 70 # more accurate | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 25 SN bases trimmed: 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 26 SN bases duplicated: 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 27 SN mismatches: 0 # from NM fields | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 28 SN error rate: 0.000000e+00 # mismatches / bases mapped (cigar) | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 29 SN average length: 35 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 30 SN average first fragment length: 35 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 31 SN average last fragment length: 35 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 32 SN maximum length: 35 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 33 SN maximum first fragment length: 35 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 34 SN maximum last fragment length: 35 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 35 SN average quality: 255.0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 36 SN insert size average: 100.0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 37 SN insert size standard deviation: 0.0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 38 SN inward oriented pairs: 1 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 39 SN outward oriented pairs: 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 40 SN pairs with other orientation: 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 41 SN pairs on different chromosomes: 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 42 SN percentage of properly paired reads (%): 100.0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 43 # First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part. | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 44 # Columns correspond to qualities and rows to cycles. First column is the cycle number. | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 45 FFQ 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 46 FFQ 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 47 FFQ 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 48 FFQ 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 49 FFQ 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 50 FFQ 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 51 FFQ 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 52 FFQ 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 53 FFQ 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 54 FFQ 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
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changeset | 117 # Mismatches per cycle and quality. Use `grep ^MPC | cut -f 2-` to extract this part. | 
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changeset | 118 # Columns correspond to qualities, rows to cycles. First column is the cycle number, second | 
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changeset | 119 # is the number of N's and the rest is the number of mismatches | 
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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changeset | 150 MPC 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 151 MPC 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 152 MPC 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 153 MPC 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 154 MPC 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 155 MPC 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 156 # GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part. | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 157 GCF 28.39 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 158 GCF 58.29 1 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 159 # GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part. | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 160 GCL 21.36 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 161 GCL 43.97 1 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 162 # ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 163 GCC 1 0.00 0.00 50.00 50.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 164 GCC 2 0.00 0.00 50.00 50.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 165 GCC 3 50.00 0.00 50.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 166 GCC 4 0.00 50.00 50.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 167 GCC 5 50.00 0.00 50.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 168 GCC 6 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 169 GCC 7 50.00 0.00 0.00 50.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 170 GCC 8 50.00 0.00 50.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 171 GCC 9 0.00 50.00 0.00 50.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 172 GCC 10 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 173 GCC 11 50.00 0.00 0.00 50.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 174 GCC 12 0.00 50.00 0.00 50.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 175 GCC 13 50.00 0.00 0.00 50.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 176 GCC 14 50.00 0.00 50.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 177 GCC 15 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 178 GCC 16 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 179 GCC 17 50.00 50.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 180 GCC 18 0.00 50.00 0.00 50.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 181 GCC 19 0.00 50.00 50.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 182 GCC 20 50.00 50.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 183 GCC 21 0.00 50.00 50.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 184 GCC 22 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 185 GCC 23 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 186 GCC 24 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 187 GCC 25 0.00 0.00 50.00 50.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 188 GCC 26 0.00 50.00 50.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 189 GCC 27 50.00 0.00 50.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 190 GCC 28 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 191 GCC 29 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 192 GCC 30 50.00 0.00 0.00 50.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 193 GCC 31 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 194 GCC 32 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 195 GCC 33 0.00 0.00 50.00 50.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 196 GCC 34 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 197 GCC 35 0.00 0.00 50.00 50.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 198 # ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 199 FBC 1 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 200 FBC 2 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 201 FBC 3 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 202 FBC 4 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 203 FBC 5 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 204 FBC 6 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 205 FBC 7 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 206 FBC 8 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 207 FBC 9 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 208 FBC 10 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 209 FBC 11 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 210 FBC 12 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 211 FBC 13 100.00 0.00 0.00 0.00 0.00 0.00 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 212 FBC 14 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 213 FBC 15 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 214 FBC 16 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 215 FBC 17 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 216 FBC 18 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 217 FBC 19 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 218 FBC 20 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 219 FBC 21 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 220 FBC 22 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 221 FBC 23 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 222 FBC 24 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 223 FBC 25 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 224 FBC 26 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 225 FBC 27 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 226 FBC 28 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 227 FBC 29 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 228 FBC 30 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 229 FBC 31 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 230 FBC 32 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 231 FBC 33 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 232 FBC 34 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 233 FBC 35 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 234 # ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 235 LBC 1 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 236 LBC 2 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 237 LBC 3 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 238 LBC 4 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 239 LBC 5 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 240 LBC 6 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 241 LBC 7 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 242 LBC 8 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 243 LBC 9 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 244 LBC 10 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 245 LBC 11 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 246 LBC 12 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 247 LBC 13 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 248 LBC 14 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 249 LBC 15 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 250 LBC 16 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 251 LBC 17 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 252 LBC 18 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 253 LBC 19 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 254 LBC 20 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 255 LBC 21 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 256 LBC 22 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 257 LBC 23 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 258 LBC 24 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 259 LBC 25 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 260 LBC 26 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 261 LBC 27 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 262 LBC 28 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 263 LBC 29 0.00 0.00 100.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 264 LBC 30 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 265 LBC 31 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 266 LBC 32 0.00 100.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 267 LBC 33 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 268 LBC 34 100.00 0.00 0.00 0.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 269 LBC 35 0.00 0.00 0.00 100.00 0.00 0.00 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 270 # Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 271 IS 0 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 272 IS 1 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 273 IS 2 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 274 IS 3 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 275 IS 4 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 276 IS 5 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 277 IS 6 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 278 IS 7 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 279 IS 8 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 280 IS 9 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 281 IS 10 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 282 IS 11 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 283 IS 12 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 284 IS 13 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 285 IS 14 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 286 IS 15 0 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 287 IS 16 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 288 IS 17 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 289 IS 18 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 290 IS 19 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 291 IS 20 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 292 IS 21 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 293 IS 22 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 294 IS 23 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 295 IS 24 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 296 IS 25 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 297 IS 26 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 298 IS 27 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 299 IS 28 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 300 IS 29 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 301 IS 30 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 302 IS 31 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 303 IS 32 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 304 IS 33 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 305 IS 34 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 306 IS 35 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 307 IS 36 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 308 IS 37 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 309 IS 38 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 310 IS 39 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 311 IS 40 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 312 IS 41 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 313 IS 42 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 314 IS 43 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 315 IS 44 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 316 IS 45 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 317 IS 46 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 318 IS 47 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 319 IS 48 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 320 IS 49 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 321 IS 50 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 322 IS 51 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 323 IS 52 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 324 IS 53 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 325 IS 54 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 326 IS 55 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 327 IS 56 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 328 IS 57 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 329 IS 58 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 330 IS 59 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 331 IS 60 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 332 IS 61 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 333 IS 62 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 334 IS 63 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 335 IS 64 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 336 IS 65 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 337 IS 66 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 338 IS 67 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 339 IS 68 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 340 IS 69 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 341 IS 70 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 342 IS 71 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 343 IS 72 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 344 IS 73 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 345 IS 74 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 346 IS 75 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 347 IS 76 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 348 IS 77 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 349 IS 78 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 350 IS 79 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 351 IS 80 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 352 IS 81 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 353 IS 82 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 354 IS 83 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 355 IS 84 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 356 IS 85 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 357 IS 86 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 358 IS 87 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 359 IS 88 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 360 IS 89 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 361 IS 90 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 362 IS 91 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 363 IS 92 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 364 IS 93 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 365 IS 94 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 366 IS 95 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 367 IS 96 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 368 IS 97 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 369 IS 98 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 370 IS 99 0 0 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 371 IS 100 1 1 0 0 | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 372 # Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 373 RL 35 2 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 374 # Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 375 FRL 35 1 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 376 # Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 377 LRL 35 1 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 378 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 379 ID 1 1 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 380 # Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev) | 
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8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 381 IC 2 1 0 0 0 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 382 # Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part. | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 383 COV [1-1] 1 69 | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 384 # GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile | 
| 
8f08fd44a749
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
 matthias parents: diff
changeset | 385 GCD 0.0 100.000 0.000 0.000 0.000 0.000 0.000 | 
