Mercurial > repos > matthias > samtools_fastx

annotate samtools_phase/test-data/samtools_phase_out_1_log.txt @ 2:d57f13cf1427 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit f10a2b16814f61326750364c497ad143cac3d137-dirty
author matthias
date Mon, 25 Feb 2019 03:34:56 -0500
parents 8595ee28daf5
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
parents:
diff changeset
1 CC
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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2 CC Descriptions:
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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3 CC
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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4 CC CC comments
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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5 CC PS start of a phase set
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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6 CC FL filtered region
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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7 CC M[012] markers; 0 for singletons, 1 for phased and 2 for filtered
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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8 CC EV supporting reads; SAM format
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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9 CC // end of a phase set
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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10 CC
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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11 CC Formats of PS, FL and M[012] lines (1-based coordinates):
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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12 CC
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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13 CC PS chr phaseSetStart phaseSetEnd
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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14 CC FL chr filterStart filterEnd
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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15 CC M? chr PS pos allele0 allele1 hetIndex #supports0 #errors0 #supp1 #err1
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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16 CC
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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17 CC
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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18 PS chrI 1187 1290
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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19 M1 chrI 1187 1187 T A 1 2 0 4 0
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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20 M1 chrI 1187 1216 T A 2 3 0 4 0
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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21 M1 chrI 1187 1222 C A 3 3 0 3 1
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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22 M1 chrI 1187 1290 A T 4 1 0 0 0
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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23 EV 0 chrI 1 40 3M * 0 0 AAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1145
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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24 EV 0 chrI 1 40 3M * 0 0 TTC * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1157
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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25 EV 0 chrI 1 40 3M * 0 0 TTC * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1141
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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26 EV 0 chrI 1 40 3M * 0 0 AAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1147
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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27 EV 0 chrI 1 40 3M * 0 0 AAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1176
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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28 EV 0 chrI 1 40 3M * 0 0 AAC * YP:i:1 YF:i:0 YI:i:2 YO:i:1 YS:i:1164
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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29 EV 0 chrI 2 40 3M * 0 0 TCA * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1215
8595ee28daf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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30 //