Mercurial > repos > matthias > data_manager_dada2
diff test-data/dada2_taxonomy.loc @ 4:51b90d282704 draft
planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 2f47c03d1b775ab796c75c806c1ab247bb51359d
| author | matthias |
|---|---|
| date | Fri, 10 May 2019 11:52:03 -0400 |
| parents | |
| children | e374299894b0 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/dada2_taxonomy.loc Fri May 10 11:52:03 2019 -0400 @@ -0,0 +1,20 @@ +# This is a sample file distributed with Galaxy that is used to define a +# list of dada2 reference data sets for taxonomy assignment, using three +# tab separated columns: +# +# <unique_build_id> <display_name> <fasta_file_path> <taxlevels> +# +# Datasets can be retrieved from https://benjjneb.github.io/dada2/training.html +# +# taxlevels is a comma separated list of taxonomy levels +silva_132 Silva version 132 /tmp/tmpC8Yc3F/tmpzwAZwA/tmpZp3_e0/database/data_manager_tool-datal4tFOr/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species +rdp_16 RDP trainset 16 /tmp/tmpC8Yc3F/tmpzwAZwA/tmpZp3_e0/database/data_manager_tool-datal4tFOr/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species +greengenes_13.84 GreenGenes version 13.84 /tmp/tmpC8Yc3F/tmpzwAZwA/tmpZp3_e0/database/data_manager_tool-datal4tFOr/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species +unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpC8Yc3F/tmpzwAZwA/tmpZp3_e0/database/data_manager_tool-datal4tFOr/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species +RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpC8Yc3F/tmpzwAZwA/tmpZp3_e0/database/data_manager_tool-datal4tFOr/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species +gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpC8Yc3F/tmpzwAZwA/tmpZp3_e0/database/data_manager_tool-datal4tFOr/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species +hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpC8Yc3F/tmpzwAZwA/tmpZp3_e0/database/data_manager_tool-datal4tFOr/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species +silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpC8Yc3F/tmpzwAZwA/tmpZp3_e0/database/data_manager_tool-datal4tFOr/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species +PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpC8Yc3F/tmpzwAZwA/tmpZp3_e0/database/data_manager_tool-datal4tFOr/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species +rdp_16 RDP trainset 16 /tmp/tmpLsjmNt/tmppH8mTW/tmpqUnkc6/database/data_manager_tool-data1EI7iU/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species +silva_132 Silva version 132 /tmp/tmpLsjmNt/tmppH8mTW/tmpqUnkc6/database/data_manager_tool-data1EI7iU/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species