Mercurial > repos > matthias > data_manager_dada2

comparison data_manager/dada2_fetcher.xml @ 6:e374299894b0 draft

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planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 11ea529bf7414a4a20e414b50ce7cee5cb5dc4c4
author matthias
date Thu, 06 Jun 2019 07:59:19 -0400
parents b899349a9c2b
children
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5:b899349a9c2b 6:e374299894b0
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="dada_fetcher" name="dada2 data manager" tool_type="manage_data" version="0.0.6"> 2 <tool id="dada_fetcher" name="dada2 data manager" tool_type="manage_data" version="0.0.7">
3 <description>Download reference databases</description> 3 <description>Download reference databases</description>
4 <command detect_errors="exit_code"><![CDATA[ 4 <command detect_errors="exit_code"><![CDATA[
5 python '$__tool_directory__/data_manager.py' 5 python '$__tool_directory__/data_manager.py'
6 --out '$out_file' 6 --out '$out_file'
7 #set dataset = str($db_cond.db_select) + '_' + str($db_cond.version_select) 7 #set dataset = str($db_cond.db_select) + '_' + str($db_cond.version_select)
39 </param> 39 </param>
40 </when> 40 </when>
41 <when value="unite"> 41 <when value="unite">
42 <param name="version_select" type="select" label="Database version"> 42 <param name="version_select" type="select" label="Database version">
43 <option value="8.0_fungi">release 8.0 for Fungi</option> 43 <option value="8.0_fungi">release 8.0 for Fungi</option>
44 <option value="8.0_fungi_singleton">release 8.0 for Fungi including global and 97% singletons</option> 44 <option value="8.0_fungi_singletons">release 8.0 for Fungi including global and 97% singletons</option>
45 </param> 45 </param>
46 </when> 46 </when>
47 <when value="RefSeq_RDP"> 47 <when value="RefSeq_RDP">
48 <param name="version_select" type="select" label="Database version"> 48 <param name="version_select" type="select" label="Database version">
49 <option value="2018_05">05/2018</option> 49 <option value="2018_05">05/2018</option>
92 </test> 92 </test>
93 <test> 93 <test>
94 <param name="db_cond|db_select" value="unite"/> 94 <param name="db_cond|db_select" value="unite"/>
95 <param name="db_cond|version_select" value="8.0_fungi"/> 95 <param name="db_cond|version_select" value="8.0_fungi"/>
96 <output name="out_file" file="unite8fungi_json"/> 96 <output name="out_file" file="unite8fungi_json"/>
97 </test>
98 <test>
99 <param name="db_cond|db_select" value="unite"/>
100 <param name="db_cond|version_select" value="8.0_fungi_singletons"/>
101 <output name="out_file" file="unite8fungisingletons_json"/>
97 </test> 102 </test>
98 <test> 103 <test>
99 <param name="db_cond|db_select" value="RefSeq_RDP"/> 104 <param name="db_cond|db_select" value="RefSeq_RDP"/>
100 <param name="db_cond|version_select" value="2018_05"/> 105 <param name="db_cond|version_select" value="2018_05"/>
101 <output name="out_file" file="RefSeq_RDP2018_json"/> 106 <output name="out_file" file="RefSeq_RDP2018_json"/>