Mercurial > repos > matthias > data_manager_bowtie2_index_builder

comparison data_manager_conf.xml @ 0:68fd790f3916 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
author matthias
date Thu, 02 Apr 2020 13:16:53 +0000
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-1:000000000000 0:68fd790f3916
1 <?xml version="1.0"?>
2 <data_managers>
3
4 <data_manager tool_file="data_manager/bowtie2_index_builder.xml" id="bowtie2_index_builder" version="2.2.6">
5 <data_table name="bowtie2_indexes">
6 <output>
7 <column name="value" />
8 <column name="dbkey" />
9 <column name="name" />
10 <column name="path" output_ref="out_file" >
11 <move type="directory" relativize_symlinks="True">
12 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bowtie2_index/${value}</target>
14 </move>
15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie2_index/${value}/${path}</value_translation>
16 <value_translation type="function">abspath</value_translation>
17 </column>
18 </output>
19 </data_table>
20
21 <data_table name="tophat2_indexes">
22 <output>
23 <column name="value" />
24 <column name="dbkey" />
25 <column name="name" />
26 <column name="path" output_ref="out_file" >
27 <!-- no move, always happens as part of bowtie2 and uses that path -->
28 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie2_index/${value}/${path}</value_translation>
29 <value_translation type="function">abspath</value_translation>
30 </column>
31 </output>
32 </data_table>
33 </data_manager>
34
35 </data_managers>