Mercurial > repos > matthias > data_manager_bowtie2_index_builder

annotate tool_data_table_conf.xml.test @ 0:68fd790f3916 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
author matthias
date Thu, 02 Apr 2020 13:16:53 +0000
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68fd790f3916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
matthias
parents:
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1 <tables>
68fd790f3916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
matthias
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2 <!-- Locations of indexes in the Bowtie2 mapper format -->
68fd790f3916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
matthias
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3 <table name="bowtie2_indexes" comment_char="#">
68fd790f3916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
matthias
parents:
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4 <columns>value, dbkey, name, path</columns>
68fd790f3916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
matthias
parents:
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5 <file path="${__HERE__}/test-data/bowtie2_indices.loc" />
68fd790f3916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
matthias
parents:
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6 </table>
68fd790f3916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
matthias
parents:
diff changeset
7 <!-- Locations of indexes in the Bowtie2 mapper format for TopHat2 to use -->
68fd790f3916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
matthias
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8 <table name="tophat2_indexes" comment_char="#">
68fd790f3916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
matthias
parents:
diff changeset
9 <columns>value, dbkey, name, path</columns>
68fd790f3916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
matthias
parents:
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10 <file path="${__HERE__}/test-data/tophat2_indices.loc" />
68fd790f3916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
matthias
parents:
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11 </table>
68fd790f3916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
matthias
parents:
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12 <!-- Locations of all fasta files under genome directory -->
68fd790f3916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
matthias
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13 <table name="all_fasta" comment_char="#">
68fd790f3916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
matthias
parents:
diff changeset
14 <columns>value, dbkey, name, path</columns>
68fd790f3916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
matthias
parents:
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15 <file path="${__HERE__}/test-data/all_fasta.loc" />
68fd790f3916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
matthias
parents:
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16 </table>
68fd790f3916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit eb0405e83bae7b6f11446236044a6aed2fcaf4d6"
matthias
parents:
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17 </tables>