Mercurial > repos > matthias > dada2_plotqualityprofile

comparison macros.xml @ 11:36224cf72a7b draft

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planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit b59ed2476188176bb5b2973f59899b7d733e7641-dirty
author matthias
date Thu, 29 Aug 2019 09:02:34 -0400
parents 279014cdd101
children c06c6f88da97
comparison
equal deleted inserted replaced
10:279014cdd101 11:36224cf72a7b
12 12
13 <xml name="version_command"> 13 <xml name="version_command">
14 <version_command><![CDATA[ 14 <version_command><![CDATA[
15 echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ") 15 echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
16 ]]></version_command> 16 ]]></version_command>
17 </xml>
18
19 <xml name="stdio">
20 <stdio>
21 <regex match="Error: cannot allocate" source="stderr" level="fatal_oom" description="Out of memory error occurred" />
22 <regex match="'Calloc' could not allocate memory" source="stderr" level="fatal_oom" description="Out of memory error occurred" />
23 </stdio>
17 </xml> 24 </xml>
18 25
19 <xml name="citations"> 26 <xml name="citations">
20 <citations> 27 <citations>
21 <citation type="doi">10.1038/nmeth.3869</citation> 28 <citation type="doi">10.1038/nmeth.3869</citation>