Mercurial > repos > matthias > dada2_assigntaxonomyaddspecies

diff dada2_assignTaxonomyAddspecies.xml @ 11:e5b6d976b60c draft

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planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit b59ed2476188176bb5b2973f59899b7d733e7641-dirty
author matthias
date Thu, 29 Aug 2019 09:06:19 -0400
parents 7050480907b5
children
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--- a/dada2_assignTaxonomyAddspecies.xml	Tue May 28 12:50:54 2019 -0400
+++ b/dada2_assignTaxonomyAddspecies.xml	Thu Aug 29 09:06:19 2019 -0400
@@ -1,9 +1,10 @@
-<tool id="dada2_assignTaxonomyAddspecies" name="dada2: assignTaxonomy and addSpecies" version="@DADA2_VERSION@+galaxy@WRAPPER_VERSION@">
+<tool id="dada2_assignTaxonomyAddspecies" name="dada2: assignTaxonomy and addSpecies" version="@DADA2_VERSION@+galaxy@WRAPPER_VERSION@" profile="19.09">
     <description>Learn Error rates</description>
     <macros>
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements"/>
+    <expand macro="stdio"/>
     <expand macro="version_command"/>
     <command detect_errors="exit_code"><![CDATA[
     Rscript '$dada2_script' \${GALAXY_SLOTS:-1}
@@ -130,7 +131,7 @@
     </outputs>
     <tests>
         <!-- test w default params -->
-        <test expect_num_outputs="1">>
+        <test expect_num_outputs="1">
             <param name="seqs" ftype="dada2_sequencetable" value="removeBimeraDenovo_F3D0.tab"/>
             <param name="reference_cond|reference_select" value="history"/>
             <param name="reference_cond|refFasta" ftype="fasta" value="reference.fa"/>