Mercurial > repos > matthias > bam_to_sam
comparison samtools_merge/test-data/2.merge.expected.sam @ 0:56e8f02cf63a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
| author | matthias |
|---|---|
| date | Fri, 22 Feb 2019 15:40:36 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:56e8f02cf63a |
|---|---|
| 1 @HD VN:1.4 | |
| 2 @SQ SN:insert LN:599 | |
| 3 @SQ SN:ref1 LN:45 | |
| 4 @SQ SN:ref2 LN:40 | |
| 5 @SQ SN:ref3 LN:4 | |
| 6 @RG ID:fish PG:donkey | |
| 7 @RG ID:cow PU:13_&^&&*(:332 | |
| 8 @RG PU:*9u8jkjjkjd: ID:colt | |
| 9 @RG ID:fish-55424A4 PG:llama | |
| 10 @RG ID:cow-3A2CCEF5 PU:13_&^&&*(:332 PG:donkey-4861F4EF | |
| 11 @RG PU:*9u8jkjjkjd: ID:colt-6ADB4A65 | |
| 12 @RG ID:fish-39E5EF | |
| 13 @RG ID:cow-1802EEEC PU:13_&^&&*(:332 | |
| 14 @RG PU:*9u8jkjjkjd: ID:colt-7EC68B3F | |
| 15 @PG ID:bull PP:donkey | |
| 16 @PG ID:donkey | |
| 17 @PG ID:moose | |
| 18 @PG PP:moose ID:cow | |
| 19 @PG ID:llama | |
| 20 @PG ID:bull-2B019719 PP:donkey-4861F4EF | |
| 21 @PG ID:donkey-4861F4EF | |
| 22 @PG ID:bull-60104A41 PP:donkey-2EE20DF8 | |
| 23 @PG ID:donkey-2EE20DF8 | |
| 24 @CO | |
| 25 @CO Do you know? | |
| 26 @CO Do you know? | |
| 27 @CO Another comment from test_input_1_c | |
| 28 r000 99 insert 50 30 10M = 80 30 ATTTAGCTAC AAAAAAAAAA RG:Z:cow PG:Z:bull | |
| 29 r000 211 insert 80 30 10M = 50 -30 CCCAATCATT AAAAAAAAAA RG:Z:cow PG:Z:bull | |
| 30 r001 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 RG:Z:fish | |
| 31 r005 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF | |
| 32 r008 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 | |
| 33 r002 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 | |
| 34 r003 0 ref1 9 30 5H6M * 0 0 AGCTAA * RG:Z:cow | |
| 35 r006 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF | |
| 36 r007 0 ref1 9 30 5H6M * 0 0 AGCTAA * RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF | |
| 37 r009 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 | |
| 38 r010 0 ref1 9 30 5H6M * 0 0 AGCTAA * RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 | |
| 39 r004 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * RG:Z:colt | |
| 40 r007 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF | |
| 41 r010 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 | |
| 42 r003 16 ref1 29 30 6H5M * 0 0 TAGGC * RG:Z:cow | |
| 43 r006 16 ref1 29 30 6H5M * 0 0 TAGGC * RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF | |
| 44 r009 16 ref1 29 30 6H5M * 0 0 TAGGC * RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 | |
| 45 r001 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * RG:Z:fish | |
| 46 r005 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF | |
| 47 r008 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 | |
| 48 x1 0 ref2 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * RG:Z:colt PG:Z:bull | |
| 49 x7 0 ref2 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 | |
| 50 x10 0 ref2 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * RG:Z:cow-1802EEEC PG:Z:bull-60104A41 | |
| 51 x2 0 ref2 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? RG:Z:colt PG:Z:bull | |
| 52 x8 0 ref2 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 | |
| 53 x11 0 ref2 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? RG:Z:cow-1802EEEC PG:Z:bull-60104A41 | |
| 54 x3 0 ref2 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? RG:Z:fish PG:Z:bull | |
| 55 x9 0 ref2 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 | |
| 56 x12 0 ref2 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? RG:Z:cow-1802EEEC PG:Z:bull-60104A41 | |
| 57 x4 0 ref2 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? RG:Z:fish PG:Z:bull | |
| 58 x10 0 ref2 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 | |
| 59 x13 0 ref2 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? RG:Z:cow-1802EEEC PG:Z:bull-60104A41 | |
| 60 x5 0 ref2 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? RG:Z:fish PG:Z:bull | |
| 61 x11 0 ref2 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 | |
| 62 x14 0 ref2 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? RG:Z:cow-1802EEEC PG:Z:bull-60104A41 | |
| 63 x6 0 ref2 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ??????????????????????? RG:Z:cow | |
| 64 x12 0 ref2 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ??????????????????????? RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 | |
| 65 x15 0 ref2 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ??????????????????????? RG:Z:cow-1802EEEC PG:Z:bull-60104A41 | |
| 66 u1 4 * 0 30 23M * 0 0 TAATTAAGTCTACAGAAAAAAAA ??????????????????????? | |
| 67 u2 4 * 0 30 * * 0 0 TAATTAAGTCTACAGAAAAAAAA ??????????????????????? |