Mercurial > repos > kls286 > chap_test_20230328
view examples/edd/pipeline.yaml @ 13:455e0b0bf8d4 draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 2d65c72740d0439b8385378a890b3763d717f152-dirty
author | kls286 |
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date | Wed, 29 Mar 2023 18:21:43 +0000 |
parents | cbbe42422d56 |
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pipeline: # Download example data - reader.URLReader: url: https://gitlab01.classe.cornell.edu/api/v4/projects/308/repository/files/edd%2fdata.tar/raw?ref=main headers: PRIVATE-TOKEN: # your token here - processor.URLResponseProcessor - writer.ExtractArchiveWriter: filename: examples/edd # Calibrate detector - reader.YAMLReader: filename: examples/edd/ceria_calibration_config.yaml schema: MCACeriaCalibrationConfig - processor.MCACeriaCalibrationProcessor - writer.YAMLWriter: filename: examples/edd/ceria_calibrated.yaml force_overwrite: true # Gather calibrated detector data - reader.MultipleReader: readers: - YAMLReader: filename: examples/edd/map.yaml schema: MapConfig - YAMLReader: filename: examples/edd/ceria_calibrated.yaml schema: MCACeriaCalibrationConfig - processor.MCADataProcessor - writer.NexusWriter: filename: examples/edd/map_detector_data.nxs force_overwrite: true # Compute sample strain map - reader.MultipleReader: readers: - NexusReader: filename: examples/edd/map_detector_data.nxs - YAMLReader: filename: examples/edd/strain_analysis_config.yaml schema: StrainAnalysisConfig - processor.StrainAnalysisProcessor - writer.YAMLWriter: filename: examples/edd/map_strain_data.yaml force_overwrite: true