--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Galaxy.md	Tue Mar 28 15:07:30 2023 +0000
@@ -0,0 +1,48 @@
+# Install Planemo
+```
+python -m venv planemo
+. planemo/bin/activate
+pip install planemo
+```
+
+### Initialize chap.xml
+```
+planemo tool_init --id 'chap' --name 'CHESS Analysis Pipeline' --example_command 'runner.py --config config.yaml' --example_input config.yaml --cite_url 'https://github.com/CHESSComputing/ChessAnalysisPipeline' --help_from_command 'runner.py --help' --test_case --example_output data.out
+```
+this command will output:
+```
+Tool written to chap.xml
+No test-data directory, creating one.
+Copying test-file config.yaml
+```
+
+Perform linting:
+```
+planemo l
+Linting tool /Users/vk/Work/CHESS/ChessPipeline/chap.xml
+Applying linter tests... CHECK
+.. CHECK: 1 test(s) found.
+Applying linter output... CHECK
+.. INFO: 1 outputs found.
+Applying linter inputs... CHECK
+.. INFO: Found 2 input parameters.
+Applying linter help... CHECK
+.. CHECK: Tool contains help section.
+.. CHECK: Help contains valid reStructuredText.
+Applying linter general... CHECK
+.. CHECK: Tool defines a version [0.1.0+galaxy0].
+.. CHECK: Tool defines a name [CHESS Analysis Pipeline].
+.. CHECK: Tool defines an id [chap].
+.. CHECK: Tool specifies profile version [21.05].
+Applying linter command... CHECK
+.. INFO: Tool contains a command.
+Applying linter citations... CHECK
+.. CHECK: Found 1 likely valid citations.
+Applying linter tool_xsd... CHECK
+.. INFO: File validates against XML schema.
+```
+
+Now, we can start server via the following commad: `planemo s`,
+it will take a while. Once finished we may visit
+`http://127.0.0.1:9090` to see our galaxy hub along with
+our pipeline tool.