Mercurial > repos > kls286 > chap_test_20230328
diff reduce.xml @ 19:4b553f7fb7fb draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
author | kls286 |
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date | Tue, 11 Apr 2023 11:10:48 +0000 |
parents | |
children | fc1b08c6fa10 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/reduce.xml Tue Apr 11 11:10:48 2023 +0000 @@ -0,0 +1,50 @@ +<tool id="CHAP_saxswaxs_reduce" name="SAXSWAXS Reduce Map" version="0.1.0+galaxy0" python_template_version="3.5" profile="21.05"> + <requirements> + <requirement type="package" version="0.0.3">chessanalysispipeline</requirement> + <requirement type="package" version="2.28.1">requests</requirement> + <requirement type="package" version="2023.3.0">pyfai</requirement> + <requirement type="package" version="1.10.7">pydantic</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + pip --exists-action i install certif-pyspec==1.5.3 + cp '$mapconfig' map.yaml && + cp '$integrationconfig' integration.yaml && + CHAP --config '$__tool_directory__/pipeline.yaml' + ]]></command> + <inputs> + <param type="data" name="mapconfig" format="yaml" /> + <param type="data" name="integrationconfig" format="yaml" /> + </inputs> + <outputs> + <data name="specdata" label="Map of SPEC data" format="nex" from_work_dir="map_specdata.nxs"/> + <data name="reduceddata" label="Map of reduced data" format="nex" from_work_dir="map_reduceddata.nxs"/> + </outputs> + <tests> + <test> + <param name="mapconfig" value="map.yaml"/> + <param name="integrationconfig" value="integration.yaml"/> + <output name="specdata" value="map_specdata.nxs"/> + <output name="reduceddata" value="map_reduceddata.nxs"/> + </test> + </tests> + <help><![CDATA[ + usage: PROG [-h] [--config CONFIG] [--verbose] + +options: + -h, --help show this help message and exit + --config CONFIG Input configuration file + --verbose verbose output + + ]]></help> + <citations> + <citation type="bibtex"> +@misc{githubChessAnalysisPipeline, + author = {LastTODO, FirstTODO}, + year = {TODO}, + title = {CHAPSAXSWAXSdemo}, + publisher = {GitHub}, + journal = {GitHub repository}, + url = {https://github.com/CHESSComputing/ChessAnalysisPipeline}, +}</citation> + </citations> +</tool>