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comparison ChessAnalysisPipeline.egg-info/PKG-INFO @ 9:cc597d6571bc draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 9b179e6d8333851ea75448356f72c2f03157db8f-dirty
author kls286
date Wed, 29 Mar 2023 17:40:12 +0000
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8:ff9adf4df366 9:cc597d6571bc
1 Metadata-Version: 2.1
2 Name: ChessAnalysisPipeline
3 Version: 0.0.2
4 Summary: CHESS analysis pipeline framework
5 Home-page: https://github.com/CHESSComputing/ChessAnalysisPipeline
6 Author: Keara Soloway, Rolf Verberg, Valentin Kuznetsov
7 Author-email:
8 Classifier: Programming Language :: Python :: 3
9 Classifier: License :: OSI Approved :: MIT License
10 Classifier: Operating System :: OS Independent
11 Requires-Python: >=3.8
12 Description-Content-Type: text/markdown
13 License-File: LICENSE
14
15 ### Pipeline
16 This package conains proof of concepts pipeline framework for workflow
17 execution. It requires proper configuration of pipeline in terms classes, e.g.
18 ```
19 # pipeline deifinition as sequence of objects
20 pipeline:
21 - reader.Reader
22 - processor.Processor
23 - fitter.Fitter
24 - processor.Processor
25 - writer.Writer
26 - fitter.Fitter
27 - writer.Writer
28
29 # specific object parameters, e.g. our reader accepts fileName=data.csv
30 reader.Reader:
31 fileName: data.csv
32
33
34 # specific object parameters, e.g. our writer accepts fileName=data.out
35 writer.Writer:
36 fileName: data.out
37 ```
38
39 Then, you may execute this pipeline as following:
40 ```
41 ./runner.py --config config.yaml
42 ```
43 and, check the output in `data.out` file.
44