Mercurial > repos > kls286 > chap_test_20230328
comparison examples/saxswaxs/pipeline.yaml @ 0:cbbe42422d56 draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 1401a7e1ae007a6bda260d147f9b879e789b73e0-dirty
| author | kls286 |
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| date | Tue, 28 Mar 2023 15:07:30 +0000 |
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| -1:000000000000 | 0:cbbe42422d56 |
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| 1 pipeline: | |
| 2 | |
| 3 # Download example data | |
| 4 - reader.URLReader: | |
| 5 url: https://gitlab01.classe.cornell.edu/api/v4/projects/308/repository/files/saxswaxs%2fdata.tar/raw?ref=main | |
| 6 headers: | |
| 7 PRIVATE-TOKEN: # your token here | |
| 8 - processor.URLResponseProcessor | |
| 9 - writer.ExtractArchiveWriter: | |
| 10 filename: examples/saxswaxs | |
| 11 | |
| 12 # Collect map data | |
| 13 - reader.YAMLReader: | |
| 14 filename: examples/saxswaxs/map_1d.yaml | |
| 15 schema: MapConfig | |
| 16 - processor.MapProcessor | |
| 17 - writer.NexusWriter: | |
| 18 filename: examples/saxswaxs/saxswaxs_map.nxs | |
| 19 force_overwrite: true | |
| 20 | |
| 21 # Integrate map detetcor data | |
| 22 - reader.MultipleReader: | |
| 23 readers: | |
| 24 - YAMLReader: | |
| 25 filename: examples/saxswaxs/map_1d.yaml | |
| 26 schema: MapConfig | |
| 27 - YAMLReader: | |
| 28 filename: examples/saxswaxs/integration_saxs_azimuthal.yaml | |
| 29 schema: IntegrationConfig | |
| 30 - processor.IntegrateMapProcessor | |
| 31 - writer.NexusWriter: | |
| 32 filename: examples/saxswaxs/saxs_azimuthal_integrated.nxs | |
| 33 force_overwrite: true |