Mercurial > repos > kls286 > chap_test_20230328
comparison chap.xml @ 0:cbbe42422d56 draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 1401a7e1ae007a6bda260d147f9b879e789b73e0-dirty
author | kls286 |
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date | Tue, 28 Mar 2023 15:07:30 +0000 |
parents | |
children | 1016ae8f31ec |
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1 <tool id="chap" name="CHESS Analysis Pipeline" version="0.1.0+galaxy0" python_template_version="3.5" profile="21.05"> | |
2 <requirements> | |
3 </requirements> | |
4 <command detect_errors="exit_code"><![CDATA[ | |
5 cp '$input' data.csv && runner.py --config '$config' | |
6 ]]></command> | |
7 <inputs> | |
8 <param type="data" name="config" format="yaml" /> | |
9 <param type="data" name="input" format="csv" /> | |
10 </inputs> | |
11 <outputs> | |
12 <data name="output" format="csv" from_work_dir="test-data" /> | |
13 </outputs> | |
14 <tests> | |
15 <test> | |
16 <param name="config" value="config.yaml"/> | |
17 <param name="input" value="data.csv"/> | |
18 <output name="output" value="data.out"/> | |
19 </test> | |
20 </tests> | |
21 <help><![CDATA[ | |
22 usage: PROG [-h] [--config CONFIG] [--verbose] | |
23 | |
24 options: | |
25 -h, --help show this help message and exit | |
26 --config CONFIG Input configuration file | |
27 --verbose verbose output | |
28 | |
29 ]]></help> | |
30 <citations> | |
31 <citation type="bibtex"> | |
32 @misc{githubChessAnalysisPipeline, | |
33 author = {LastTODO, FirstTODO}, | |
34 year = {TODO}, | |
35 title = {ChessAnalysisPipeline}, | |
36 publisher = {GitHub}, | |
37 journal = {GitHub repository}, | |
38 url = {https://github.com/CHESSComputing/ChessAnalysisPipeline}, | |
39 }</citation> | |
40 </citations> | |
41 </tool> |