comparison chap.xml @ 0:cbbe42422d56 draft

planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 1401a7e1ae007a6bda260d147f9b879e789b73e0-dirty
author kls286
date Tue, 28 Mar 2023 15:07:30 +0000
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children 1016ae8f31ec
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-1:000000000000 0:cbbe42422d56
1 <tool id="chap" name="CHESS Analysis Pipeline" version="0.1.0+galaxy0" python_template_version="3.5" profile="21.05">
2 <requirements>
3 </requirements>
4 <command detect_errors="exit_code"><![CDATA[
5 cp '$input' data.csv && runner.py --config '$config'
6 ]]></command>
7 <inputs>
8 <param type="data" name="config" format="yaml" />
9 <param type="data" name="input" format="csv" />
10 </inputs>
11 <outputs>
12 <data name="output" format="csv" from_work_dir="test-data" />
13 </outputs>
14 <tests>
15 <test>
16 <param name="config" value="config.yaml"/>
17 <param name="input" value="data.csv"/>
18 <output name="output" value="data.out"/>
19 </test>
20 </tests>
21 <help><![CDATA[
22 usage: PROG [-h] [--config CONFIG] [--verbose]
23
24 options:
25 -h, --help show this help message and exit
26 --config CONFIG Input configuration file
27 --verbose verbose output
28
29 ]]></help>
30 <citations>
31 <citation type="bibtex">
32 @misc{githubChessAnalysisPipeline,
33 author = {LastTODO, FirstTODO},
34 year = {TODO},
35 title = {ChessAnalysisPipeline},
36 publisher = {GitHub},
37 journal = {GitHub repository},
38 url = {https://github.com/CHESSComputing/ChessAnalysisPipeline},
39 }</citation>
40 </citations>
41 </tool>