Mercurial > repos > kls286 > chap_test_20230328

comparison CHAP/models/basemodel.py @ 0:cbbe42422d56 draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 1401a7e1ae007a6bda260d147f9b879e789b73e0-dirty
author kls286
date Tue, 28 Mar 2023 15:07:30 +0000
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-1:000000000000 0:cbbe42422d56
1 #!/usr/bin/env python
2 #-*- coding: utf-8 -*-
3 #pylint: disable=
4 """
5 File : basemodel.py
6 Author : Valentin Kuznetsov <vkuznet AT gmail dot com>
7 Description: BaseModel module
8 """
9
10 # system modules
11 import logging
12
13
14 class BaseModel():
15 """
16 BaseModel docstring
17 """
18 def __init__(self, filename=None, **kwds):
19 self.logger = logging.getLogger(__name__)
20 self.construct(filename, **kwds)
21 self.map = dict(name=__name__)
22
23 def construct(self, filename=None, **kwds):
24 """
25 construct from CLI object
26
27 :param filename: input file name
28 :param **kwds: named arguments
29 :return: Basemodel object
30 """
31 print('construct API calls: ', end='')
32 if filename and filename.endswith('yaml'):
33 self.construct_from_yaml(filename)
34 elif filename and filename != '':
35 self.construct_from_file(filename)
36 else:
37 self.construct_from_config(**kwds)
38
39 @classmethod
40 def construct_from_config(cls, **config):
41 """
42 construct from config object
43
44 :param **config: named arguments
45 :return: Basemodel object
46 """
47 print(f'construct_from_config: {config}')
48
49 @classmethod
50 def construct_from_yaml(cls, filename):
51 """
52 construct from CLI object
53
54 :param filename: input file name
55 :return: Basemodel object
56 """
57 print(f'construct_from_yaml: {filename}')
58
59 @classmethod
60 def construct_from_file(cls, filename):
61 """
62 construct from filename
63
64 :param filename: input file name
65 :return: Basemodel object
66 """
67 print(f'construct_from_file: {filename}')
68
69 def getMap(self):
70 """
71 return model map
72
73 :return: map object
74 """
75 return self.map
76
77
78 if __name__ == '__main__':
79 print('### should construct from file.yaml')
80 base = BaseModel('file.yaml')
81 print('### should construct from file.txt')
82 base = BaseModel('file.txt')
83 print('### should construct from config')
84 base = BaseModel(param='file.txt', arg='bla')