Mercurial > repos > kls286 > chap_test_20230328

annotate setup.py @ 9:cc597d6571bc draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 9b179e6d8333851ea75448356f72c2f03157db8f-dirty
author kls286
date Wed, 29 Mar 2023 17:40:12 +0000
parents cbbe42422d56
children 7cc954f15149
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cbbe42422d56 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 1401a7e1ae007a6bda260d147f9b879e789b73e0-dirty
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1 """
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2 Standard python setup.py file
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3 to build : python setup.py build
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4 to install : python setup.py install --prefix=<some dir>
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5 to clean : python setup.py clean
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6 to build doc : python setup.py doc
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7 to run tests : python setup.py test
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8 """
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9
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10 import os
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11 import setuptools
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12
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13 def datafiles(idir, pattern=None):
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14 """Return list of data files in provided relative dir"""
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15 files = []
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16 for dirname, dirnames, filenames in os.walk(idir):
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17 for subdirname in dirnames:
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18 files.append(os.path.join(dirname, subdirname))
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19 for filename in filenames:
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20 if filename[-1] == '~':
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21 continue
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22 # match file name pattern (e.g. *.css) if one given
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23 if pattern and not fnmatch.fnmatch(filename, pattern):
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24 continue
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25 files.append(os.path.join(dirname, filename))
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26 return files
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27
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28 data_files = datafiles('examples')
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29
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30 with open("README.md", "r") as fh:
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31 long_description = fh.read()
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32
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33 setuptools.setup(
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34 name="ChessAnalysisPipeline",
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35 version="0.0.1",
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36 author="Keara Soloway, Rolf Verberg, Valentin Kuznetsov",
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37 author_email="",
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38 description="CHESS analysis pipeline framework",
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39 long_description=long_description,
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40 long_description_content_type="text/markdown",
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41 url="https://github.com/CHESSComputing/ChessAnalysisPipeline",
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42 packages=['CHAP', 'MLaaS'],
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43 package_dir={'CHAP': 'CHAP', 'MLaaS': 'MLaaS'},
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44 package_data={'examples': data_files},
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45 scripts=['scripts/CHAP'],
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46 classifiers=[
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47 "Programming Language :: Python :: 3",
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48 "License :: OSI Approved :: MIT License",
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49 "Operating System :: OS Independent",
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50 ],
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51 python_requires='>=3.8',
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52 install_requires=[
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53 'PyYAML'
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54 ],
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55 )