# HG changeset patch
# User jowong
# Date 1542096565 18000
# Node ID ff5b31cdc6ba333fdf5d8d091987ccf1e84e3a18
# Parent  1bf76073c034ac2d1f230b70100e7f54bd41eb9c
planemo upload

diff -r 1bf76073c034 -r ff5b31cdc6ba spotyping.xml
--- a/spotyping.xml	Tue Nov 13 03:03:41 2018 -0500
+++ b/spotyping.xml	Tue Nov 13 03:09:25 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="spotyping" name="Spoligotype Prediction" version="1.0.0">
+<tool id="spotyping" name="Spoligotype Prediction" version="1.0.1">
     <description>fast and accurate in silico Mycobacterium spoligotyping from sequence reads</description>
     <requirements>
         <requirement type="package" version="2.1">spotyping</requirement>
@@ -39,9 +39,9 @@
         </section>
     </inputs>
     <outputs>
-        <data name="output1" label="spoligotyping results" format="txt" from_work_dir="SpoTyping"/>
-        <data name="output2" label="spoligotyping log" format="txt" from_work_dir="SpoTyping.log"/>
-        <data name="output3" label="query" format="excel.xls" from_work_dir="spotyping.xls"/>
+        <data name="spotyping_results" label="spoligotyping results" format="txt" from_work_dir="SpoTyping"/>
+        <data name="spotyping_log" label="spoligotyping log" format="txt" from_work_dir="SpoTyping.log"/>
+        <data name="sitvit_database_query" label="query" format="excel.xls" from_work_dir="spotyping.xls"/>
     </outputs>
     <help><![CDATA[
 This is a modified version of IUC's wrapper of spotyping without the concatenation and renaming of the input files. The wrapper also runs properly when supplied with paired-end reads