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comparison spotyping.xml @ 4:d849a2f860e2 draft

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planemo upload
author jowong
date Mon, 05 Nov 2018 10:21:31 -0500
parents ee4b383e7a4b
children f1b3a263dd3a
comparison
equal deleted inserted replaced
3:ee4b383e7a4b 4:d849a2f860e2
1 <tool id="spotyping" name="Spoligotype Prediction" version="0.1.2"> 1 <tool id="spotyping" name="Spoligotype Prediction" version="0.1.3">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="2.1">spotyping</requirement> 3 <requirement type="package" version="2.1">spotyping</requirement>
4 </requirements> 4 </requirements>
5 <command detect_errors="aggressive"><![CDATA[ 5 <command detect_errors="aggressive"><![CDATA[
6 SpoTyping.py 6 SpoTyping.py
25 <param name="input2" format="data" type="data" label="input" help="Specify dataset with single reads"/> 25 <param name="input2" format="data" type="data" label="input" help="Specify dataset with single reads"/>
26 </when> 26 </when>
27 </conditional> 27 </conditional>
28 </inputs> 28 </inputs>
29 <outputs> 29 <outputs>
30 <data name="output1" label="spoligotyping results" format="data" from_work_dir="SpoTyping"/> 30 <data name="output1" label="spoligotyping results" format="txt" from_work_dir="SpoTyping"/>
31 <data name="output2" label="spoligotyping log" format="data" from_work_dir="SpoTyping.log"/> 31 <data name="output2" label="spoligotyping log" format="txt" from_work_dir="SpoTyping.log"/>
32 <data name="output3" label="query" format="data" from_work_dir="*.xls"/> 32 <data name="output3" label="query" format="txt" from_work_dir="*.xls"/>
33 </outputs> 33 </outputs>
34 <help><![CDATA[ 34 <help><![CDATA[
35 Usage: python SpoTyping.py [options] FASTQ_1/FASTA FASTQ_2(optional) 35 Usage: python SpoTyping.py [options] FASTQ_1/FASTA FASTQ_2(optional)
36 ]]></help> 36 ]]></help>
37 <citations> 37 <citations>