Mercurial > repos > jowong > prince_galaxy

diff prince_postprocess.xml @ 0:88748989a22a draft default tip

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author jowong
date Tue, 13 Nov 2018 11:41:37 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/prince_postprocess.xml	Tue Nov 13 11:41:37 2018 -0500
@@ -0,0 +1,18 @@
+<tool id="prince_postprocess" name="Prince Postprocess" version="1.0.0">
+    <description>Postprocess PRINCE galaxy output</description>
+    <command interpreter="python"><![CDATA[
+        prince_postprocess.py -i $prince_output  -s #for $path in $paths# $path.element_identifier #end for# -f #for $path in $paths# $path #end for#
+    ]]></command>
+    <inputs>
+        <param name="paths" type="data" format="data" label="Collection of files" help="" optional="False" multiple="True"/>
+        <param name="prince_output" format="txt" type="data" label="PRINCE output"  />
+    </inputs>
+    <outputs>
+        <data name="output" format="txt" from_work_dir="prince_postprocess_output.txt"/>
+    </outputs>
+    <help>
+This tool processes the PRINCE galaxy output such that it is in line with the command line
+    </help>
+    <citations>
+    </citations>
+</tool>