--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_path.py	Tue Nov 13 11:41:37 2018 -0500
@@ -0,0 +1,24 @@
+#!/usr/bin/env python
+
+import sys
+import argparse as ap
+
+parser = ap.ArgumentParser(prog='data_path', conflict_handler='resolve',
+                           description="Output the galaxy file path of datasets in a text file")
+
+input = parser.add_argument_group('Input', '')
+input.add_argument('-i', '--input', nargs='+', required=True, help="Paths to data1")
+input.add_argument('-j', '--input2', nargs='*', required=True, help="Paths to data2")
+
+if len(sys.argv) == 0:
+    parser.print_usage()
+    sys.exit(1)
+
+args = parser.parse_args()
+output = open('paths.txt', 'w')
+if len(args.input2) == 0:
+	for index,path in enumerate(args.input):
+		output.write("%s\n" % (path))
+else:
+	for index,path in enumerate(args.input):
+		output.write("%s\t%s\n" % (path, args.input2[index]))