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1 <tool id="filler" name="Filler" version="1.0.1">
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2 <description>Filler Function to deal with paired collection</description>
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3 <command interpreter="python"><![CDATA[
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4 filler.py
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5 #if str( $data_input.data_selector ) == "paired"
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6 -i $data_input.input1.forward
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7 #end if
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8 #if str( $data_input.data_selector ) == "single"
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9 -i "$data_input.input2"
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10 #end if
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11
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12 -o $output
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13 ]]></command>
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14 <inputs>
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15 <conditional name="data_input">
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16 <param name="data_selector" type="select" label="Single or Paired-end Data" help="Select between paired and single end data to add name to dataset">
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17 <option value="paired">Paired</option>
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18 <option value="single">Single</option>
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19 </param>
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20 <when value="paired">
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21 <param name="input1" format="data" type="data_collection" collection_type="paired" label="Select a paired collection" help="a paired data"/>
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22 </when>
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23 <when value="single">
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24 <param name="input2" format="data" type="data" label="input" help="Specify dataset with single reads"/>
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25 </when>
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26 </conditional>
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27 </inputs>
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28 <outputs>
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29 <data name="output" type="data_collection"/>
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30 </outputs>
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31 <help>
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32 This tool processes the PRINCE galaxy output such that it is in line with the command line
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33 </help>
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34 <citations>
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35 </citations>
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36 </tool>
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