# HG changeset patch
# User jowong
# Date 1542890398 18000
# Node ID f99fa69fe0d505b7569aa623c549c1c5ca308ad1
# Parent  1850de9baad05e296da930220e1282bae7b65323
planemo upload

diff -r 1850de9baad0 -r f99fa69fe0d5 kwip.xml
--- a/kwip.xml	Thu Nov 22 07:02:35 2018 -0500
+++ b/kwip.xml	Thu Nov 22 07:39:58 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="kwip" name="kwip" version="1.1.6">
+<tool id="kwip" name="kwip" version="1.1.7">
     <description>Calculates k-mer weighted inner product, a de novo estimator of genetic similarity</description>
     <requirements>
         <requirement type="package" version="0.2.0">kwip</requirement>
@@ -10,9 +10,6 @@
         -k kwip.kernel 
         -d kwip.dist 
         $advanced.unweighted
-        #if str( $advanced.calc ) == "True"
-            -w $advanced.weight -C
-        #end if 
         #for $input in $inputs# $(basename "$input.element_identifier" .fastq).ct.gz #end for#
 	#for $input in $inputs# && rm $(basename "$input.element_identifier" .fastq).ct.gz  #end for#
     ]]></command>
@@ -20,8 +17,6 @@
         <param name="inputs" format="data" type="data_collection" label="inputs" help="Specify dataset with hashed reads"/>
         <section name="advanced" title="Advanced options" expanded="false">
             <param type="boolean" argument="--unweighted" label="Unweighted Inner Product" checked="false" truevalue="--unweighted" falsevalue="" help="Use the unweighted inner proudct kernel. (default: False)"/>
-            <param type="boolean" name="calc" label="Calculate only the bin weight vector, not kernel matrix." help="Calculate only the bin weight vector, not kernel matrix with bin weight vector file" truevalue="True" falsevalue="False" checked="false" />
-            <param type="data" name="weight" label="Bin weight vector file" help="Bin weight vector file (input, or output w/ -C)." />
             <param name="thread" type="integer" value="1" label="Threads" help="Number of simultaneous threads to execute (default: 1)" />
 
         </section>