# HG changeset patch
# User jowong
# Date 1542895772 18000
# Node ID f4f6cbe16e5f18b55e283b803022d91ce3d5e72e
# Parent  47d17009b48f1b2b33348c7b376a4a6f65353d0c
planemo upload

diff -r 47d17009b48f -r f4f6cbe16e5f kwip.xml
--- a/kwip.xml	Thu Nov 22 09:05:53 2018 -0500
+++ b/kwip.xml	Thu Nov 22 09:09:32 2018 -0500
@@ -1,14 +1,15 @@
-<tool id="kwip" name="kwip" version="1.2.4">
+<tool id="kwip" name="kwip" version="1.2.5">
     <description>Calculates k-mer weighted inner product, a de novo estimator of genetic similarity</description>
     <requirements>
         <requirement type="package" version="0.2.0">kwip</requirement>
     </requirements>
-    <command detect_errors="exit_code"><![CDATA[ 
+    <command detect_errors="exit_code"><![CDATA[
+        #for $input in $inputs# cp $input $(basename "$input.element_identifier" .fastq).ct.gz && #end for# 
         kwip 
         -t $advanced.thread 
         -k kwip.kernel 
         -d kwip.dist 
-        #for $input in $inputs# $input #end for#
+        #for $input in $inputs# $(basename "$input.element_identifier" .fastq).ct.gz #end for#
     ]]></command>
     <inputs>
         <param name="inputs" format="data" type="data_collection" label="inputs" help="Specify dataset with hashed reads"/>