# HG changeset patch
# User jowong
# Date 1542631299 18000
# Node ID a234558c5a4096574c6fc5c47245c2846a66bb69
# Parent  80d123aa88b1316057cf5e853cd9c5881171796f
planemo upload

diff -r 80d123aa88b1 -r a234558c5a40 kwip.xml
--- a/kwip.xml	Mon Nov 19 07:02:37 2018 -0500
+++ b/kwip.xml	Mon Nov 19 07:41:39 2018 -0500
@@ -4,6 +4,7 @@
         <requirement type="package" version="0.2.0">kwip</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
+        #for $input in $inputs# cp $input "$input".ct.gz #end for# &&
         kwip 
         -t $advanced.thread 
         -k kwip.kernel 
@@ -12,7 +13,7 @@
         #if str( $advanced.calc ) == "True"
             -w $advanced.weight -C
         #end if 
-        #for $input in $inputs# $input #end for#
+        #for $input in $inputs# "$input".ct.gz #end for#
     ]]></command>
     <inputs>
         <param name="inputs" format="data" type="data_collection" label="inputs" help="Specify dataset with hashed reads"/>