--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/kwip_postprocess.py	Thu Nov 22 09:46:09 2018 -0500
@@ -0,0 +1,27 @@
+#!/usr/bin/env python
+
+import sys
+import argparse as ap
+import re
+parser = ap.ArgumentParser(prog='kwip_postprocess', conflict_handler='resolve',
+                           description="Postprocess galaxy kWIP output")
+
+input = parser.add_argument_group('Input', '')
+input.add_argument('-i', '--input', nargs=1, required=True, help="kWIP galaxy OUTPUT")
+
+
+if len(sys.argv) == 0:
+    parser.print_usage()
+    sys.exit(1)
+
+args = parser.parse_args()
+
+
+with open(args.input[0]) as kwip_output:
+	with open('kwip_postprocess_output.txt', 'w') as output:
+		for line in kwip_output:
+                        new_line = re.sub('(_1.fastq(.gz)*|_2.fastq(.gz)*|.fastq(.gz)*)', '', line)
+			output.write(new_line)
+
+
+