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comparison kwip.xml @ 11:a1dbbc803160 draft

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planemo upload
author jowong
date Thu, 22 Nov 2018 08:32:49 -0500
parents 1c03467f2267
children 9ab6536c9c14
comparison
equal deleted inserted replaced
10:1c03467f2267 11:a1dbbc803160
1 <tool id="kwip" name="kwip" version="1.1.9"> 1 <tool id="kwip" name="kwip" version="1.2.0">
2 <description>Calculates k-mer weighted inner product, a de novo estimator of genetic similarity</description> 2 <description>Calculates k-mer weighted inner product, a de novo estimator of genetic similarity</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.2.0">kwip</requirement> 4 <requirement type="package" version="0.2.0">kwip</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 kwip -h 7 #for $input in $inputs# cp $input $(basename "$input.element_identifier" .fastq).ct.gz && #end for#
8 kwip
9 -t $advanced.thread
10 -k kwip.kernel
11 -d kwip.dist
12 $advanced.unweighted
13 #for $input in $inputs# $(basename "$input.element_identifier" .fastq).ct.gz #end for#
8 ]]></command> 14 ]]></command>
9 <inputs> 15 <inputs>
10 <param name="inputs" format="data" type="data_collection" label="inputs" help="Specify dataset with hashed reads"/> 16 <param name="inputs" format="data" type="data_collection" label="inputs" help="Specify dataset with hashed reads"/>
11 <section name="advanced" title="Advanced options" expanded="false"> 17 <section name="advanced" title="Advanced options" expanded="false">
12 <param type="boolean" argument="--unweighted" label="Unweighted Inner Product" checked="false" truevalue="--unweighted" falsevalue="" help="Use the unweighted inner proudct kernel. (default: False)"/> 18 <param type="boolean" argument="--unweighted" label="Unweighted Inner Product" checked="false" truevalue="--unweighted" falsevalue="" help="Use the unweighted inner proudct kernel. (default: False)"/>