Mercurial > repos > jowong > kwip
comparison kwip.xml @ 2:80d123aa88b1 draft
planemo upload
| author | jowong |
|---|---|
| date | Mon, 19 Nov 2018 07:02:37 -0500 |
| parents | 66d91eade17a |
| children | a234558c5a40 |
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| 1:66d91eade17a | 2:80d123aa88b1 |
|---|---|
| 1 <tool id="kwip" name="kwip" version="1.1.1"> | 1 <tool id="kwip" name="kwip" version="1.1.2"> |
| 2 <description>Calculates CNV of genomic data based on template</description> | 2 <description>Calculates CNV of genomic data based on template</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="0.2.0">kwip</requirement> | 4 <requirement type="package" version="0.2.0">kwip</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command detect_errors="exit_code"><![CDATA[ | 6 <command detect_errors="exit_code"><![CDATA[ |
| 10 -d kwip.dist | 10 -d kwip.dist |
| 11 $advanced.unweighted | 11 $advanced.unweighted |
| 12 #if str( $advanced.calc ) == "True" | 12 #if str( $advanced.calc ) == "True" |
| 13 -w $advanced.weight -C | 13 -w $advanced.weight -C |
| 14 #end if | 14 #end if |
| 15 #for $path in $paths# $path #end for# | 15 #for $input in $inputs# $input #end for# |
| 16 ]]></command> | 16 ]]></command> |
| 17 <inputs> | 17 <inputs> |
| 18 <param name="input" format="data" type="data_collection" label="input" help="Specify dataset with hashed reads"/> | 18 <param name="inputs" format="data" type="data_collection" label="inputs" help="Specify dataset with hashed reads"/> |
| 19 <section name="advanced" title="Advanced options" expanded="false"> | 19 <section name="advanced" title="Advanced options" expanded="false"> |
| 20 <param type="boolean" argument="--unweighted" label="Small count" checked="false" truevalue="--unweighted" falsevalue="" help="Use the unweighted inner proudct kernel. (default: False)"/> | 20 <param type="boolean" argument="--unweighted" label="Unweighted Inner Product" checked="false" truevalue="--unweighted" falsevalue="" help="Use the unweighted inner proudct kernel. (default: False)"/> |
| 21 <param type="boolean" name="calc" label="Calculate only the bin weight vector, not kernel matrix." help="Calculate only the bin weight vector, not kernel matrix with bin weight vector file" truevalue="True" falsevalue="False" checked="false" /> | 21 <param type="boolean" name="calc" label="Calculate only the bin weight vector, not kernel matrix." help="Calculate only the bin weight vector, not kernel matrix with bin weight vector file" truevalue="True" falsevalue="False" checked="false" /> |
| 22 <param type="data" name="weight" label="Bin weight vector file" help="Bin weight vector file (input, or output w/ -C)." /> | 22 <param type="data" name="weight" label="Bin weight vector file" help="Bin weight vector file (input, or output w/ -C)." /> |
| 23 <param name="thread" type="integer" value="1" label="Threads" help="Number of simultaneous threads to execute (default: 1)" /> | 23 <param name="thread" type="integer" value="1" label="Threads" help="Number of simultaneous threads to execute (default: 1)" /> |
| 24 | 24 |
| 25 </section> | 25 </section> |