Mercurial > repos > jowong > khmer_load_into_counting

changeset 1:54ae5353e3e9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload
author jowong
date Tue, 13 Nov 2018 13:15:20 -0500
parents 57363aa37022
children 57daf7463a42
files khmer_load_into_counting.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/khmer_load_into_counting.xml	Tue Nov 13 13:06:56 2018 -0500
+++ b/khmer_load_into_counting.xml	Tue Nov 13 13:15:20 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="khmer_load_into_counting" name="Load Into Counting" version="0.1.0">
+<tool id="khmer_load_into_counting" name="Load Into Counting" version="0.1.1">
     <description>Creates k-mer countgraph using reads</description>
     <requirements>
         <requirement type="package" version="2.1.2">khmer</requirement>
@@ -6,7 +6,7 @@
     <command detect_errors="exit_code"><![CDATA[
         load_into_counting.py
         $advanced.b
-        $advanced.small-count
+        $advanced.small
         -k $advanced.kmer
         -U $advanced.ukmer
         #if str( $advanced.max_mem ) != "0"
@@ -43,7 +43,7 @@
             </when>
         </conditional>
         <section name="advanced" title="Advanced options" expanded="false">
-            <param type="boolean" argument="--small-count" label="Small count" checked="false" truevalue="--small-count" falsevalue="" help="Reduce memory usage by using a smaller counter for individual kmers. (default: False)"/>
+            <param type="boolean" argument="--small" label="Small count" checked="false" truevalue="--small-count" falsevalue="" help="Reduce memory usage by using a smaller counter for individual kmers. (default: False)"/>
             <param type="boolean" argument="-b" label="big count" checked="True" truevalue="-b" falsevalue="--no-bigcount" help="Reduce memory usage by using a smaller counter for individual kmers. (default: True)"/>
             <param name="thread" type="integer" value="1" label="Threads" help="Number of simultaneous threads to execute (default: 1)" />
             <param name="kmer" type="integer" value="32" label="K-mer" help="K-mer size to use (default: 32)" />