# HG changeset patch
# User jowong
# Date 1543212233 18000
# Node ID c746795cbad0cce9ce667a39124eb3eaad429f09
# Parent  1736e2f830016c20a876333805c832f2ef31efd9
planemo upload

diff -r 1736e2f83001 -r c746795cbad0 khmer_load_into_counting.xml
--- a/khmer_load_into_counting.xml	Mon Nov 26 00:59:16 2018 -0500
+++ b/khmer_load_into_counting.xml	Mon Nov 26 01:03:53 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="khmer_load_into_counting" name="Load Into Counting" version="1.0.1">
+<tool id="khmer_load_into_counting" name="Load Into Counting" version="1.0.3">
     <description>Creates k-mer countgraph using reads</description>
     <requirements>
         <requirement type="package" version="2.1.2">khmer</requirement>
@@ -7,7 +7,7 @@
         load-into-counting.py
         $advanced.b
         $advanced.small
-        -k $kmer
+        -k $advanced.kmer
         -U $advanced.ukmer
         #if str( $advanced.max_mem ) != "0"
             -M $advanced.max_mem
@@ -46,7 +46,7 @@
             
             <param name="ukmer" type="integer" value="0" label="Unique K-mer" help="approximate number of unique kmers in the input set (default: 0)" />
             <param name="num_table" type="integer" value="1" label="Number of tables" help="number of tables to use (default: False)" />
-            <param name="table_size" type="integer" value="1e9" label="Maximum size of table" help="maximum size of tables to use (default: False)" />
+            <param name="table_size" type="integer" value="1000000000" label="Maximum size of table" help="maximum size of tables to use (default: False)" />
             <param name="max_mem" type="integer" value="0" label="Maximum Memory" help="number of tables to use (default: False)" />
             <param name="fp_rate" type="integer" value="0" label="FP rate override" help="Override the automatic FP rate setting for the current script" />
         </section>
@@ -59,7 +59,7 @@
 || You are running khmer version 2.1.2
 || You are also using screed version 1.0
 ||
-|| If you use this script in a publication, please cite EACH of the following:```````````````````````````````````````````````````````````````````````````
+|| If you use this script in a publication, please cite EACH of the following:
 ||
 ||   * MR Crusoe et al., 2015. http://dx.doi.org/10.12688/f1000research.6924.1
 ||   * Q Zhang et al., http://dx.doi.org/10.1371/journal.pone.0101271