Mercurial > repos > jowong > khmer_load_into_counting

comparison khmer_load_into_counting.xml @ 12:d300c7c90f63 draft

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planemo upload
author jowong
date Mon, 26 Nov 2018 01:12:52 -0500
parents ea06ad2b93fa
children efc2329bdf34
comparison
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11:ea06ad2b93fa 12:d300c7c90f63
1 <tool id="khmer_load_into_counting" name="Load Into Counting" version="1.0.4"> 1 <tool id="khmer_load_into_counting" name="Load Into Counting" version="1.0.5">
2 <description>Creates k-mer countgraph using reads</description> 2 <description>Creates k-mer countgraph using reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.1.2">khmer</requirement> 4 <requirement type="package" version="2.1.2">khmer</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 load-into-counting.py 7 load-into-counting.py
8 $advanced.b 8 $advanced.b
9 $advanced.small 9 $advanced.small
10 -k kmer 10 -k $kmer
11 -U $advanced.ukmer 11 -U $advanced.ukmer
12 #if str( $advanced.max_mem ) != "0" 12 #if str( $advanced.max_mem ) != "0"
13 -M $advanced.max_mem 13 -M $advanced.max_mem
14 #end if 14 #end if
15 #if str( $advanced.fp_rate ) != "0" 15 #if str( $advanced.fp_rate ) != "0"