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annotate test-data/sam2fastq_test.sam @ 0:aa2cf6718319 draft default tip

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author jjohnson
date Mon, 02 Nov 2015 08:48:24 -0500
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1 @HD VN:1.0 SO:unsorted
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2 @SQ SN:chr1 LN:249250621
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3 @SQ SN:chr10 LN:135534747
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4 @SQ SN:chr11 LN:135006516
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5 @SQ SN:chr12 LN:133851895
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6 @SQ SN:chr13 LN:115169878
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7 @SQ SN:chr14 LN:107349540
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8 @SQ SN:chr15 LN:102531392
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9 @SQ SN:chr16 LN:90354753
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10 @SQ SN:chr17 LN:81195210
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11 @SQ SN:chr18 LN:78077248
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12 @SQ SN:chr19 LN:59128983
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13 @SQ SN:chr2 LN:243199373
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14 @SQ SN:chr20 LN:63025520
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15 @SQ SN:chr21 LN:48129895
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16 @SQ SN:chr22 LN:51304566
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17 @SQ SN:chr3 LN:198022430
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18 @SQ SN:chr4 LN:191154276
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19 @SQ SN:chr5 LN:180915260
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20 @SQ SN:chr6 LN:171115067
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21 @SQ SN:chr7 LN:159138663
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22 @SQ SN:chr8 LN:146364022
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23 @SQ SN:chr9 LN:141213431
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24 @SQ SN:chrM_rCRS LN:16569
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25 @SQ SN:chrX LN:155270560
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26 @SQ SN:chrY LN:59373566
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27 @RG ID:120604_XYZ13-SN749_0180_BD127FACXX_6_GATCAG PL:illumina PU:barcode LB:TruSeq SM:120604_XYZ13-SN749_0180_BD127FACXX_6_GATCAG
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28 XYZ13-SN749:180:D127FACXX:6:1101:1066:2717/1 83 chr3 197681001 63 18M1602N30M = 197678145 -4506 NGACACAGAATCCGAGTGATGCTGTACCCCTCAAGGATTTAAACNAAC #FHHHJJIJIJIGGHJIIHGHE9GHBJJIJIIHHJGHHHHDD=4#B@@ XF:Z:GTAG, RG:Z:120604_XYZ13-SN749_0180_BD127FACXX_6_GATCAG IH:i:1 HI:i:1 NM:i:2 XS:A:+
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29 XYZ13-SN749:180:D127FACXX:6:1101:1066:2717/2 163 chr3 197678145 64 38M2691N10M = 197681001 4506 TTGGGCAAGAGATGCGCTTATGTATATAAAGCAAAGAACAACACAGTN BCCFFFFDHFGHHIJJJGHGHIFHHGEGIJIIJIIJJIJJIJJJJJG# XF:Z:GTAG, RG:Z:120604_XYZ13-SN749_0180_BD127FACXX_6_GATCAG IH:i:1 HI:i:1 NM:i:1 XS:A:+
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30 XYZ13-SN749:180:D127FACXX:6:1101:1066:12878/1 99 chr16 66967546 63 48M = 66967636 385 GCTNGACCTTGATGGACAGACCAATAAGGGTGGCCATGCTGCAGTGCN @@=#4=BDHHHH:AFGFHCCGCHEGIIGIE:EFGH3:?DFIIIG9BF# RG:Z:120604_XYZ13-SN749_0180_BD127FACXX_6_GATCAG IH:i:1 HI:i:1 NM:i:2
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31 XYZ13-SN749:180:D127FACXX:6:1101:1066:12878/2 147 chr16 66967636 64 7M247N41M = 66967546 -385 NGCTAACCTGAACCCGCACCTGCTCTACTACGTTCAACTCCTCTAGCG #EFFB=BB?DB6IHFBE8IHGDGEB?AFCAEHGHGBAHFHFDDDD@@@ XF:Z:CTAC, RG:Z:120604_XYZ13-SN749_0180_BD127FACXX_6_GATCAG IH:i:1 HI:i:1 NM:i:1 XS:A:-
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32 XYZ13-SN749:180:D127FACXX:6:1101:1066:130898/1 4 * 0 0 * * 0 0 CTTNTGCCTCAGCCTCCTGAGTGGCTGGGACTACAGGCACCCGCCACN @@@#4=DDFHHFHIHHIIIII<FHGEGHG9B;DD<BDDDFHH>GHFE# RG:Z:120604_XYZ13-SN749_0180_BD127FACXX_6_GATCAG
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33 XYZ13-SN749:180:D127FACXX:6:1101:1066:130898/2 4 * 0 0 * * 0 0 CTGCAATCCCAGCACTTTGGGGGGCCGAGGCGGGCGGGGCACCAGGTN @@BFFFFFHBFHHHIFBBIGHIGDBBBDDDDDB@############## RG:Z:120604_XYZ13-SN749_0180_BD127FACXX_6_GATCAG
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34 XYZ13-SN749:180:D127FACXX:6:1101:1067:49195/1 355 chr16 14972632 63 48M = 14976463 3879 GGCNTGTTTCGTTCCAACCTCTTGACCCAGGACAACGGCATTCTGACN =<?#4=22CDD<ACE:CEFABFBFEFE@EEEIAD@?0:DDD9B8)8B# RG:Z:120604_XYZ13-SN749_0180_BD127FACXX_6_GATCAG IH:i:3 HI:i:3 NM:i:2
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35 XYZ13-SN749:180:D127FACXX:6:1101:1067:49195/1 99 chr16 16371281 63 48M = 16375108 3875 GGCNTGTTTCGTTCCAACCTCTTGACCCAGGACAACGGCATTCTGACN =<?#4=22CDD<ACE:CEFABFBFEFE@EEEIAD@?0:DDD9B8)8B# RG:Z:120604_XYZ13-SN749_0180_BD127FACXX_6_GATCAG IH:i:3 HI:i:1 NM:i:2
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36 XYZ13-SN749:180:D127FACXX:6:1101:1067:49195/1 339 chr16 18528523 63 48M = 18524696 -3875 NGTCAGAATGCCGTTGTCCTGGGTCAAGAGGTTGGAACGAAACANGCC #B8)8B9DDD:0?@DAIEEE@EFEFBFBAFEC:ECA<DDC22=4#?<= RG:Z:120604_XYZ13-SN749_0180_BD127FACXX_6_GATCAG IH:i:3 HI:i:2 NM:i:2
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37 XYZ13-SN749:180:D127FACXX:6:1101:1067:49195/2 401 chr16 14976463 60 48M = 14972632 -3879 NACCACGTTCAGCTCAAGGCCGAAGGCAACGACCACATTGAGCGGGCG ##GF=B@H<IG?9B0GB06))B@F?8;GC<2+C?CFD<):A??;7;8; RG:Z:120604_XYZ13-SN749_0180_BD127FACXX_6_GATCAG IH:i:3 HI:i:3 NM:i:2
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38 XYZ13-SN749:180:D127FACXX:6:1101:1067:49195/2 147 chr16 16375108 60 48M = 16371281 -3875 NACCACGTTCAGCTCAAGGCCGAAGGCAACGACCACATTGAGCGGGCG ##GF=B@H<IG?9B0GB06))B@F?8;GC<2+C?CFD<):A??;7;8; RG:Z:120604_XYZ13-SN749_0180_BD127FACXX_6_GATCAG IH:i:3 HI:i:1 NM:i:2
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39 XYZ13-SN749:180:D127FACXX:6:1101:1067:49195/2 417 chr16 18524696 60 48M = 18528523 3875 CGCCCGCTCAATGTGGTCGTTGCCTTCGGCCTTGAGCTGAACGTGGTN ;8;7;??A:)<DFC?C+2<CG;8?F@B))60BG0B9?GI<H@B=FG## RG:Z:120604_XYZ13-SN749_0180_BD127FACXX_6_GATCAG IH:i:3 HI:i:2 NM:i:2