Mercurial > repos > jjohnson > spectrast

comparison spectrast_params.py @ 4:c9bfe6adb7cd draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/spectrast commit 592d86797e58318bad77de7c7de253056218cd1e-dirty
author jjohnson
date Wed, 25 Jul 2018 14:41:20 -0400
parents 7f02fc51bddf
children 274fdc50169b
comparison
equal deleted inserted replaced
3:7f02fc51bddf 4:c9bfe6adb7cd
12 'useProteinList', 12 'useProteinList',
13 'printMRMTable', 13 'printMRMTable',
14 'remark', 14 'remark',
15 'binaryFormat', 15 'binaryFormat',
16 'writeDtaFiles', 16 'writeDtaFiles',
17 'writeMgfFiles', 17 'writeMgfFile',
18 'writePAIdent',
18 'removeDecoyProteins', 19 'removeDecoyProteins',
19 'plotSpectra', 20 'plotSpectra',
20 'minimumProbabilityToInclude', 21 'minimumProbabilityToInclude',
21 'maximumFDRToInclude', 22 'maximumFDRToInclude',
22 'datasetName', 23 'datasetName',
39 'refreshDatabase', 40 'refreshDatabase',
40 'reduceSpectra', 41 'reduceSpectra',
41 'refreshDeleteUnmapped', 42 'refreshDeleteUnmapped',
42 'refreshDeleteMultimapped', 43 'refreshDeleteMultimapped',
43 'reannotatePeaks', 44 'reannotatePeaks',
44 'minimumNumPeaksToInclude',
45 'minimumMRMQ3MZ', 45 'minimumMRMQ3MZ',
46 'maximumMRMQ3MZ', 46 'maximumMRMQ3MZ',
47 'minimumNumPeaksToInclude',
48 'refreshTrypticOnly', 47 'refreshTrypticOnly',
49 'minimumNumReplicates', 48 'minimumNumReplicates',
50 'removeDissimilarReplicates', 49 'removeDissimilarReplicates',
51 'peakQuorum', 50 'peakQuorum',
52 'maximumNumPeaksUsed', 51 'maximumNumPeaksUsed',
82 'useProteinList', 81 'useProteinList',
83 'printMRMTable', 82 'printMRMTable',
84 'remark', 83 'remark',
85 'binaryFormat', 84 'binaryFormat',
86 'writeDtaFiles', 85 'writeDtaFiles',
87 'writeMgfFiles', 86 'writeMgfFile',
87 'writePAIdent',
88 'removeDecoyProteins', 88 'removeDecoyProteins',
89 'plotSpectra', 89 'plotSpectra',
90 'minimumProbabilityToInclude', 90 'minimumProbabilityToInclude',
91 'maximumFDRToInclude', 91 'maximumFDRToInclude',
92 'datasetName', 92 'datasetName',
109 'refreshDatabase', 109 'refreshDatabase',
110 'reduceSpectra', 110 'reduceSpectra',
111 'refreshDeleteUnmapped', 111 'refreshDeleteUnmapped',
112 'refreshDeleteMultimapped', 112 'refreshDeleteMultimapped',
113 'reannotatePeaks', 113 'reannotatePeaks',
114 'minimumNumPeaksToInclude',
115 'minimumMRMQ3MZ', 114 'minimumMRMQ3MZ',
116 'maximumMRMQ3MZ', 115 'maximumMRMQ3MZ',
117 'minimumNumPeaksToInclude',
118 'refreshTrypticOnly', 116 'refreshTrypticOnly',
119 'minimumNumReplicates', 117 'minimumNumReplicates',
120 'removeDissimilarReplicates', 118 'removeDissimilarReplicates',
121 'peakQuorum', 119 'peakQuorum',
122 'maximumNumPeaksUsed', 120 'maximumNumPeaksUsed',