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comparison snpSift_filter.xml @ 9:88f4997ccb02 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 93465571cf180554c3548338a68fa0f1604985dc-dirty
author jjohnson
date Mon, 11 Apr 2016 09:31:49 -0400
parents 2f40467536cf
children
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8:2f40467536cf 9:88f4997ccb02
31 $expr#slurp 31 $expr#slurp
32 </configfile> 32 </configfile>
33 </configfiles> 33 </configfiles>
34 <inputs> 34 <inputs>
35 <param format="vcf" name="input" type="data" label="Variant input file in VCF format"/> 35 <param format="vcf" name="input" type="data" label="Variant input file in VCF format"/>
36 <param name="expr" type="text" label="Filter criteria" help="Need help? See below a few examples." /> 36 <param name="expr" type="text" label="Filter criteria" help="Need help? See below a few examples." >
37 <sanitizer sanitize="False"/>
38 </param>
37 <param name="inverse" type="boolean" truevalue="--inverse" falsevalue="" checked="false" label="Inverse filter" help="Show lines that do not match filter expression" /> 39 <param name="inverse" type="boolean" truevalue="--inverse" falsevalue="" checked="false" label="Inverse filter" help="Show lines that do not match filter expression" />
38 <conditional name="filtering"> 40 <conditional name="filtering">
39 <param name="mode" type="select" label="Filter mode"> 41 <param name="mode" type="select" label="Filter mode">
40 <option value="entries" selected="true">Retain entries that pass filter, remove other entries</option> 42 <option value="entries" selected="true">Retain entries that pass filter, remove other entries</option>
41 <option value="field">Change the FILTER field, but retain all entries</option> 43 <option value="field">Change the FILTER field, but retain all entries</option>