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comparison tool_dependencies.xml @ 9:38b3a6b97bd1

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Add src dir snpEff_3_0 to move_file in tool_dependencies.xml
author Jim Johnson <jj@umn.edu>
date Fri, 14 Sep 2012 14:48:54 -0500
parents 1562bb333568
children 9cd24981dbd2
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8:1562bb333568 9:38b3a6b97bd1
6 <package name="snpEff" version="3.0f"> 6 <package name="snpEff" version="3.0f">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_latest_core.zip</action> 9 <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_latest_core.zip</action>
10 <action type="move_file"> 10 <action type="move_file">
11 <source>SnpSift.jar</source> 11 <source>snpEff_3_0/SnpSift.jar</source>
12 <destination>$INSTALL_DIR/bin</destination> 12 <destination>$INSTALL_DIR/bin</destination>
13 </action> 13 </action>
14 <action type="move_file"> 14 <action type="move_file">
15 <source>snpEff.jar</source> 15 <source>snpEff_3_0/snpEff.jar</source>
16 <destination>$INSTALL_DIR/bin</destination>
17 </action>
18 <action type="move_file">
19 <source>snpEff_3_0/snpEff.config</source>
16 <destination>$INSTALL_DIR/bin</destination> 20 <destination>$INSTALL_DIR/bin</destination>
17 </action> 21 </action>
18 <action type="move_directory_files"> 22 <action type="move_directory_files">
19 <source_directory>scripts</source_directory> 23 <source_directory>snpEff_3_0/scripts</source_directory>
20 <destination_directory>$INSTALL_DIR/bin</destination_directory> 24 <destination_directory>$INSTALL_DIR/bin</destination_directory>
21 </action>
22 <action type="move_file">
23 <source>snpEff.config</source>
24 <destination>$INSTALL_DIR/bin</destination>
25 </action> 25 </action>
26 <action type="set_environment"> 26 <action type="set_environment">
27 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 27 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
28 </action> 28 </action>
29 </actions> 29 </actions>