Mercurial > repos > jjohnson > snpeff_with_dep

annotate tool_dependencies.xml @ 21:077c84a53846

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
JAVA_JAR_PATH action changed to set_to in tool_dependencies.xml
author Jim Johnson <jj@umn.edu>
date Tue, 27 Nov 2012 08:22:36 -0600
parents 1cae7fb31da7
children f22f28cd881e
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
388f178f9e13 Uploaded
jjohnson
parents:
diff changeset
1 <?xml version="1.0"?>
388f178f9e13 Uploaded
jjohnson
parents:
diff changeset
2 <tool_dependency>
20
1cae7fb31da7 SnpEffv3.1
Jim Johnson <jj@umn.edu>
parents: 19
diff changeset
3 <package name="snpEff" version="3.1">
0
388f178f9e13 Uploaded
jjohnson
parents:
diff changeset
4 <install version="1.0">
388f178f9e13 Uploaded
jjohnson
parents:
diff changeset
5 <actions>
20
1cae7fb31da7 SnpEffv3.1
Jim Johnson <jj@umn.edu>
parents: 19
diff changeset
6 <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_v3_1_core.zip</action>
15
bd23bbee9883 Fix SnpSift dependency
Jim Johnson <jj@umn.edu>
parents: 14
diff changeset
7 <action type="move_directory_files">
bd23bbee9883 Fix SnpSift dependency
Jim Johnson <jj@umn.edu>
parents: 14
diff changeset
8 <source_directory>.</source_directory>
bd23bbee9883 Fix SnpSift dependency
Jim Johnson <jj@umn.edu>
parents: 14
diff changeset
9 <destination_directory>$INSTALL_DIR</destination_directory>
bd23bbee9883 Fix SnpSift dependency
Jim Johnson <jj@umn.edu>
parents: 14
diff changeset
10 </action>
14
ef4598ea7179 Add SnpSift dependency
Jim Johnson <jj@umn.edu>
parents: 13
diff changeset
11 <action type="set_environment">
21
077c84a53846 JAVA_JAR_PATH action changed to set_to in tool_dependencies.xml
Jim Johnson <jj@umn.edu>
parents: 20
diff changeset
12 <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
20
1cae7fb31da7 SnpEffv3.1
Jim Johnson <jj@umn.edu>
parents: 19
diff changeset
13 </action>
1cae7fb31da7 SnpEffv3.1
Jim Johnson <jj@umn.edu>
parents: 19
diff changeset
14 <action type="set_environment">
1cae7fb31da7 SnpEffv3.1
Jim Johnson <jj@umn.edu>
parents: 19
diff changeset
15 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
14
ef4598ea7179 Add SnpSift dependency
Jim Johnson <jj@umn.edu>
parents: 13
diff changeset
16 </action>
ef4598ea7179 Add SnpSift dependency
Jim Johnson <jj@umn.edu>
parents: 13
diff changeset
17 </actions>
ef4598ea7179 Add SnpSift dependency
Jim Johnson <jj@umn.edu>
parents: 13
diff changeset
18 </install>
15
bd23bbee9883 Fix SnpSift dependency
Jim Johnson <jj@umn.edu>
parents: 14
diff changeset
19 <readme>
bd23bbee9883 Fix SnpSift dependency
Jim Johnson <jj@umn.edu>
parents: 14
diff changeset
20 </readme>
bd23bbee9883 Fix SnpSift dependency
Jim Johnson <jj@umn.edu>
parents: 14
diff changeset
21 </package>
0
388f178f9e13 Uploaded
jjohnson
parents:
diff changeset
22 </tool_dependency>
388f178f9e13 Uploaded
jjohnson
parents:
diff changeset
23