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diff readme.rst @ 12:6d429d880a75

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Update for snpeff version 4.0
author Jim Johnson <jj@umn.edu>
date Mon, 20 Oct 2014 08:37:01 -0500
parents c5288d5a446e
children 36f3c82323e6
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--- a/readme.rst	Thu Jun 26 08:40:30 2014 -0500
+++ b/readme.rst	Mon Oct 20 08:37:01 2014 -0500
@@ -9,6 +9,10 @@
     "SnpEff Download" snpEff_download.xml
 are taken from: tool-data/snpeffect_genomedb.loc
 
+There are 2 datamanagers to download and install prebuilt SnpEff Genome databases:
+  data_manager_snpeff_databases - generates a list of available SnpEff genome databases into the tool-data/snpeff_databases.loc 
+  data_manager_snpeff_download - downloads a SnpEff genome database selected from: tool-data/snpeff_databases.loc and adds entries to snpeff_genomedb.loc,snpeff_regulationdb.loc,snpeff_annotations.loc 
+
 SnpEff citation:
 "A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.", Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Fly (Austin). 2012 Apr-Jun;6(2):80-92. PMID: 22728672 [PubMed - in process]